Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002015-TA|BGIBMGA002015-PA|IPR008381|ACN9
         (131 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0756 + 20344406-20344590,20345811-20345880,20346229-203462...    28   2.1  
04_01_0276 + 3658852-3660894                                           28   2.1  
01_03_0180 - 13514228-13514296,13514415-13514606                       28   2.8  
01_06_1032 - 33950477-33950704,33951122-33951311,33952714-33953333     27   4.9  
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839...    27   6.5  
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148...    27   6.5  
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856...    26   8.6  

>10_08_0756 +
           20344406-20344590,20345811-20345880,20346229-20346291,
           20348390-20348521,20348604-20348737,20351245-20351323,
           20353050-20353111,20353211-20353310,20353448-20353489,
           20353605-20353646,20353959-20354150
          Length = 366

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 38  DEFKRHKK--CNKDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVGEYLDPSLLDHMSDE 95
           D +K + K   N    +  + +  D  + LAK+++ L +++ K++GE L+   ++ +   
Sbjct: 201 DRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGL 260

Query: 96  QIVQLYELHK 105
           ++     LHK
Sbjct: 261 EMKLEKSLHK 270


>04_01_0276 + 3658852-3660894
          Length = 680

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 22  RGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVG 81
           RG  PE+  L   YAR+  K   +  +D+  I  + WTD+ I  A +      A+N   G
Sbjct: 605 RGHQPEIPRL--KYAREIAKIVLEREEDKKDILFDLWTDFLIYAANRCNRESHARNLNTG 662


>01_03_0180 - 13514228-13514296,13514415-13514606
          Length = 86

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 12 RLYKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDE 50
          R Y+ + R+ R LP + R     YAR+ F  ++  + D+
Sbjct: 7  RAYREVLRLVRRLPADARPYYAKYARENFVNYRDLSADD 45


>01_06_1032 - 33950477-33950704,33951122-33951311,33952714-33953333
          Length = 345

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 26  PELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVGEYLD 85
           PEL  +      DE  R  + +  EAK +++ W D      + +K + +  ++  G YL 
Sbjct: 82  PELAAVRAMDEEDEIFRAMERDNREAKAYVDSWGDRMRETCELLKQVREPGSR--GSYL- 138

Query: 86  PSLLDHMSDEQIVQLYELHK 105
                   D +  ++Y LHK
Sbjct: 139 -------KDSEKQEMYRLHK 151


>04_04_1271 -
           32282865-32283167,32283429-32283561,32283683-32283908,
           32284058-32284274,32284398-32284558,32285309-32285449,
           32285621-32286944
          Length = 834

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 20  VHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAINL-AKQMKPLHQAKNK 78
           +HR L P   +L DN      +R K  +   AK+F+N+ TD  + L A  + P + A+  
Sbjct: 649 IHRDLKPSNILLDDN------RRPKVADFGTAKLFINDQTDPTLVLSAGYIAPEYAAQGN 702

Query: 79  M 79
           +
Sbjct: 703 L 703


>01_03_0242 +
           14113721-14113966,14114102-14114260,14114495-14114868,
           14114939-14115419,14115651-14116192,14116253-14116531,
           14116837-14116918,14116994-14117086,14117173-14117367
          Length = 816

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 69  MKPLHQAKNKMVGEYLDPSLLDHMSDEQIVQL 100
           +K LH+ K   VG YL  S L H SD++++ +
Sbjct: 659 IKRLHKRKMAEVGNYLATSFLAH-SDKRVIMV 689


>02_03_0321 -
           17683766-17683834,17685085-17685150,17685568-17685633,
           17685827-17685897,17688035-17688053,17688405-17688687,
           17688775-17688945,17689060-17689431,17689629-17689669,
           17690112-17690365,17691185-17691263,17691390-17691950
          Length = 683

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 71  PLHQAKNKMVGEYLDPSLLDHMSDEQIVQLYELHKA 106
           P H  ++++  EYL     D  S+ Q++ LYEL  +
Sbjct: 195 PRHGLQSELQSEYLSSCTQDLDSNWQLLDLYELENS 230


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,886,603
Number of Sequences: 37544
Number of extensions: 137062
Number of successful extensions: 293
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 8
length of query: 131
length of database: 14,793,348
effective HSP length: 74
effective length of query: 57
effective length of database: 12,015,092
effective search space: 684860244
effective search space used: 684860244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)