GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002015-TA|BGIBMGA002015-PA|IPR008381|ACN9
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30939| Best HMM Match : ACN9 (HMM E-Value=1.6e-35)                  90   6e-19
SB_53558| Best HMM Match : Queuosine_synth (HMM E-Value=5.4)           28   2.8  
SB_9894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.8  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     27   5.0  
SB_28231| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_40105| Best HMM Match : La (HMM E-Value=4.3)                        26   8.7  
SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          26   8.7  
SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3)           26   8.7  
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)              26   8.7  
SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)             26   8.7  
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)           26   8.7  
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)                     26   8.7  
SB_19533| Best HMM Match : UME (HMM E-Value=0.53)                      26   8.7  
SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8)           26   8.7  
SB_14973| Best HMM Match : THAP (HMM E-Value=1.9e-05)                  26   8.7  
SB_12750| Best HMM Match : CX (HMM E-Value=7.7)                        26   8.7  
SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.7  
SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)              26   8.7  

>SB_30939| Best HMM Match : ACN9 (HMM E-Value=1.6e-35)
          Length = 115

 Score = 89.8 bits (213), Expect = 6e-19
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 3/107 (2%)

Query: 1   MSSPEHVSRVRRLYKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTD 60
           MS P H   ++ LY+ + ++HR LP E++ LGD YA+DEF+RHKK ++++A  F+ EW  
Sbjct: 1   MSLPRHTLAIQALYRRVLKLHRKLPLEIKALGDQYAKDEFRRHKKASQEQAVRFMQEWKI 60

Query: 61  YAINLAKQMKPLHQAKNKMVGEYLDPSLLDHMSDEQIVQLYELHKAA 107
           YA  + +Q   ++  +  ++G+ L    ++ +++EQ+ QLY L +AA
Sbjct: 61  YADTIEQQ---VNSQQLNVLGKDLKDEHIESLTEEQLGQLYSLQEAA 104


>SB_53558| Best HMM Match : Queuosine_synth (HMM E-Value=5.4)
          Length = 133

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q +EL
Sbjct: 30  KNKVVSRYIDSQFLGHTRAADLLQSFEL 57


>SB_9894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 5   EHVSRVRRLYK----LIFRVHRGLPPELRVLGDNYARDE-FKRHKKCNKDEAKIFLNE 57
           EH  RV+ +      L+F+V +G PP  R L    A  E F  ++  N ++ K FL++
Sbjct: 149 EHNERVKNVIPKDKLLVFKVEQGWPPLCRFL--EIAEPEIFFPYENVNSEDVKAFLHD 204


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 36  ARDEFKRHKKCNKDE---AKIFLNEWTDYA 62
           +RD+ K H+  NKD    A++F+ +W DY+
Sbjct: 820 SRDDAKNHQN-NKDREEFAEVFIAKWVDYS 848


>SB_28231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 5  EHVSRVRRLYKLIFRVHRGLPPELRVLGDNYARDEFKRHKKCNKDEAKIFLNEWTDYAIN 64
          E V R+++  + +FR+H+G    LR+        E + HK   + E  + + +W ++   
Sbjct: 4  EFVLRIQKWREFVFRIHKGRKFVLRI--HKGCVFELRIHK--GRAEFVLRIQKWREFVFR 59

Query: 65 LAKQMK 70
          + K  K
Sbjct: 60 IHKGRK 65


>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 576 KNKVVSRYIDSQFLGHTRAADLLQSFKL 603


>SB_40105| Best HMM Match : La (HMM E-Value=4.3)
          Length = 434

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 185 KNKVVSRYIDSQFLGHTRATDLLQSFKL 212


>SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 72  LHQAKNKMVGEYLDPSLLDHMSDE 95
           LHQ  +K V EY+DP   + +S++
Sbjct: 375 LHQKYSKTVEEYIDPGHAERISED 398


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 344 KNKVVSRYIDSQFLGHTRAADLLQSFKL 371


>SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3)
          Length = 230

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 73  KNKVVSRYIDSQFLGHTRAADLLQSFKL 100


>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
          Length = 725

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 150 KNKVVSRYIDSQFLGHTRAADLLQSFKL 177


>SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 73  KNKVVSRYIDSQFLGHTRAADLLQSFKL 100


>SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
          Length = 443

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 12  KNKVVSRYIDSQFLGHTRAADLLQSFKL 39


>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 715 KNKVVSRYIDSQFLGHTRAADLLQSFKL 742


>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
          Length = 623

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 185 KNKVVSRYIDSQFLGHTRAADLLQSFKL 212


>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
          Length = 934

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 381 KNKVVSRYIDSQFLGHTRAADLLQSFKL 408


>SB_19533| Best HMM Match : UME (HMM E-Value=0.53)
          Length = 522

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 30  KNKVVSRYIDSQFLGHTRAADLLQSFKL 57


>SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8)
          Length = 230

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 73  KNKVVSRYIDSQFLGHTRAADLLQSFKL 100


>SB_14973| Best HMM Match : THAP (HMM E-Value=1.9e-05)
          Length = 317

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 3  SPEHVSRVRRLYKLIF-RVHRGLPPELRVLGDNYARDEFKRH---KKCNKDEAK 52
          SP+  S  R+  +++  RVH    P+  V  D+++ D +KR    ++C+  + K
Sbjct: 24 SPQEPSLRRKWAEIVACRVHFADLPKYCVCSDHFSNDSYKRRVNGRRCSSSQRK 77


>SB_12750| Best HMM Match : CX (HMM E-Value=7.7)
          Length = 279

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 227 KNKVVSRYIDSQFLGHTRAADLLQSFKL 254


>SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 651

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 76  KNKMVGEYLDPSLLDHMSDEQIVQLYEL 103
           KNK+V  Y+D   L H     ++Q ++L
Sbjct: 177 KNKVVSRYIDSQFLGHTRAADLLQSFKL 204


>SB_1745| Best HMM Match : LexA_DNA_bind (HMM E-Value=1.9)
          Length = 398

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 36  ARDEFKRHKKCNKDEAKIFLNEWTDYAINLAKQMKPLHQAKNKMVGEYLDPSLLDHMSDE 95
           A+++ +RH    ++  ++ L E   +  +  KQ + L Q +   +  Y +  L ++ SDE
Sbjct: 101 AQEDKERH--VTEERKELLLQEIRRFP-SKKKQKELLEQERQNRIKMYRERILTNNKSDE 157

Query: 96  QIVQLYE 102
            +VQ+ E
Sbjct: 158 TLVQVQE 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,355,864
Number of Sequences: 59808
Number of extensions: 150775
Number of successful extensions: 341
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)