GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002014-TA|BGIBMGA002014-PA|IPR008271|Serine/threonine
protein kinase, active site, IPR000719|Protein kinase,
IPR002290|Serine/threonine protein kinase, IPR011009|Protein
kinase-like
         (961 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    36   0.001
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   4.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   5.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   10.0 

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 732 IHIKAVRSYTQQMXXXXXXXXXTGIVHADIKPDNILVNENKLNLKLCDFGAASQV-TDNE 790
           I  K + S  +Q+         T +VH D+   N+LV EN   +K+ DFG +  V  DN 
Sbjct: 589 IQPKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENH-TVKVSDFGLSRDVYQDNV 647

Query: 791 ITPYLVSRF---YRAPEIILGVPYDHGIDMWSTACTIYELST-GKIMFSGKSNNEMLKY 845
                  +    + A E +    Y    D+WS    ++E+ T G   + G  ++E+L +
Sbjct: 648 YCKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDF 706


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 149 ELTMIEDDLNLEELMRQKELLQARLVAYFSDK 180
           E T   D    EEL ++ +L +AR+  +FS++
Sbjct: 240 ERTQYPDIYTREELAQRTKLTEARIQVWFSNR 271


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 517 SPQSQRSVSPTSKNKSHDHKEKNKEERKHIRTETRSETLIKKIENESKSTIKLQKSNKDS 576
           +P  + +++P  + ++ DH+ +N+ +R     +    T      N      K  +S+ + 
Sbjct: 305 NPGEKTNIAPRERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPANRGNGFPK--RSSDEQ 362

Query: 577 EW 578
           +W
Sbjct: 363 QW 364


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 516 FSPQSQRSVSPTSKNKSHDHKEKNKEERK----HIRTETRSETLIKKIENESKSTIKLQK 571
           F  + +  +  T K+ SH     N  E+K    H     ++  L K  EN   + + +  
Sbjct: 236 FKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLDKNPENTLGTMLSIHP 295

Query: 572 SNKDSE 577
           S  D E
Sbjct: 296 SKLDVE 301


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,335
Number of Sequences: 317
Number of extensions: 6132
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 961
length of database: 114,650
effective HSP length: 63
effective length of query: 898
effective length of database: 94,679
effective search space: 85021742
effective search space used: 85021742
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)