Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002013-TA|BGIBMGA002013-PA|undefined
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 109 4e-24
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 93 6e-19
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913... 32 1.3
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 31 2.2
01_05_0411 - 21918416-21918762,21919003-21919164,21922220-219223... 30 3.9
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763... 30 5.1
06_01_0075 + 615415-616061,616144-616295,616829-617865 29 8.9
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 109 bits (263), Expect = 4e-24
Identities = 65/241 (26%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 2 YTEQLMPMAFEITDHLATTFSKVIETDAGTDEK----AITAMGLLTTMETVLNVMEDNPE 57
+ E++ P A + +LA F + + + DE A+ A+G L + T+L + P
Sbjct: 513 FGEEMAPYALGLCQNLAAAFWRCMASQEADDEADDSGALAAVGCLRAISTILESVSSLPH 572
Query: 58 IMAQLEKTVLRVVGHILHHNIIEYYEEAMTLLCNLT--AKSISEDMWKVLELLYQVFEKE 115
+ Q+E T+L ++ +L + + YEE + ++ +T + SIS DMW + L+ +
Sbjct: 573 LFIQIEPTLLPIMRRMLTSDGQDVYEEVLEIVSYMTFFSPSISLDMWSLWPLMMEALNDW 632
Query: 116 GFDYFTDMMPVLHNYVTVDTNAFLS--NENHILAMFNMVKAVLNSDAEDESEIY-AAKLL 172
D+F +++ L NYV+ ++ FL+ N ++ ++++ + +++ ++S+I A KL+
Sbjct: 633 AIDFFENILVPLDNYVSRGSDHFLACKNPDYQQSLWSALSSIMMDQNMEDSDIEPAPKLI 692
Query: 173 EVMVLQCAGKIDNCLPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDK 232
EV+ C G +D + ++ L ++RL R+ L+ +L+QV+ Y NP L + L K
Sbjct: 693 EVVFQNCKGNVDQWVEPYLSLTIDRL-RRAHKPYLKCLLVQVIANAFYYNPSLTLATLHK 751
Query: 233 L 233
L
Sbjct: 752 L 752
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 92.7 bits (220), Expect = 6e-19
Identities = 55/222 (24%), Positives = 121/222 (54%), Gaps = 10/222 (4%)
Query: 2 YTEQLMPMAFEITDHLATTFSKVIETDAGTDEK----AITAMGLLTTMETVLNVMEDNPE 57
+ E++ P A + LA F + + + +E A+ A+G L + T+L + P
Sbjct: 594 FGEEMAPYALGLCQSLAAAFWRCMASSEADEEVEDTGALAAVGCLRAISTILESISSLPH 653
Query: 58 IMAQLEKTVLRVVGHILHHNIIEYYEEAMTLLCNLT--AKSISEDMWKVLELLYQVFEKE 115
+ Q+E T+L ++ +L + + YEE + ++ +T + +IS +MW + L+ +
Sbjct: 654 LFPQIEPTLLPILRRMLTSDGQDVYEEVLEIVSYMTFYSPTISLEMWGLWPLMMEALNDW 713
Query: 116 GFDYFTDMMPVLHNYVTVDTNAFLS--NENHILAMFNMVKAVL-NSDAEDESEIYAAKLL 172
D+F +++ L NY++ T+ F++ + ++ +++ + +++ + + ED I A KL+
Sbjct: 714 AIDFFENILVPLDNYISRGTDQFIACKDPDYQQSLWRALSSIMTDQNMEDSDIIPAPKLI 773
Query: 173 EVMVLQCAGKIDNCLPSFVELVLNRLTRKVKTSELRTMLLQV 214
EV+ C G++D+ + ++ L ++ L R VK L+++L+QV
Sbjct: 774 EVVFQNCKGQVDHWIEPYLRLTIDWLRRAVK-PYLKSLLVQV 814
>04_03_0434 +
15889712-15889797,15890086-15890287,15891184-15891323,
15891420-15891559,15891762-15891913,15892773-15892902,
15892990-15893141
Length = 333
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/68 (20%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 429 TPLDDRDCPVDEYVKFKTTLSALSSTEPALYHALTSVLSEDQKKQLSAVFVLADQRKAQM 488
+P+D+ VD ++ F T+ + +++PA + +L L + + + A++RK ++
Sbjct: 267 SPIDE----VDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEI 322
Query: 489 DSRRIEQS 496
+ ++E++
Sbjct: 323 EKEKLEKA 330
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 31.1 bits (67), Expect = 2.2
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 148 MFNMVKAVLNSDAEDESEIYAAKLLEVMVLQCAGKIDNCLPSFVELVLNRLTRKVKTSEL 207
+ N++K V + D S+ + KL + + +Q KI + + +L + L + +T EL
Sbjct: 570 LINLLKLV-SDDGYLTSQTCSEKL-KCLAVQIIAKIGSRQNAECDLQVLELAIQSETGEL 627
Query: 208 RTMLLQVL-IAILYSNPQLLFSILDKLQ 234
+ L L I +LYS P++L ++ KL+
Sbjct: 628 QNEALMSLPIIVLYSGPRMLGAMFRKLE 655
>01_05_0411 -
21918416-21918762,21919003-21919164,21922220-21922357,
21922992-21923142
Length = 265
Score = 30.3 bits (65), Expect = 3.9
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 6 LMPMAFEITDHLATTFSKVIETDAGTDEKAITAMGLLTTMETVLNVMEDNPEIMAQLEKT 65
++ A EI H + SK E + G++E+ M LT + + ++ NPE++ +L+K
Sbjct: 77 VLEKAKEIGGHSEASQSK--ELEQGSEEQGKKDMEALTKVMDKVKEVKSNPEVVEKLDKV 134
Query: 66 V--LRVVGHILH 75
+ + H LH
Sbjct: 135 KEDISSLAHALH 146
>03_04_0123 +
17475020-17475243,17475367-17475445,17476295-17476393,
17476499-17476682,17477139-17477206,17477530-17477787,
17477996-17478049,17478149-17478355,17478507-17478633,
17479409-17479575
Length = 488
Score = 29.9 bits (64), Expect = 5.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 145 ILAMFNMVKAVLNSDAEDESEIYAAKLLEVMVLQCAGKIDNCLPSFVELVLNRLTRKVKT 204
+L F+MV L + ED ++ +KLL M + A K DN L L ++ K+KT
Sbjct: 78 VLGQFSMVSMELFNIVEDIKKV--SKLLPEMEAEEATKRDNLLSGITNLTVSGQIEKLKT 135
>06_01_0075 + 615415-616061,616144-616295,616829-617865
Length = 611
Score = 29.1 bits (62), Expect = 8.9
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 73 ILHHNIIEYYEEAMTLLCNLTAKSISEDMWKVLELLYQVFEKEGFDYFTDMMPVLHNYVT 132
ILH II+ Y+ +L + + W ++ + FE F + +M V+ Y
Sbjct: 309 ILH--IIDMYDTIREVLITIGKDPTQREDWPIIHAMVLAFESFEFVFNAHLMLVILGYTN 366
Query: 133 VDTNAFLSNENHILAMFNMV 152
+N+ + I+ ++V
Sbjct: 367 EFSNSLQKRDQDIVNAMSLV 386
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,192
Number of Sequences: 37544
Number of extensions: 456378
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 10
length of query: 515
length of database: 14,793,348
effective HSP length: 85
effective length of query: 430
effective length of database: 11,602,108
effective search space: 4988906440
effective search space used: 4988906440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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