GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002013-TA|BGIBMGA002013-PA|undefined
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual    130   3e-31
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    28   2.7  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score =  130 bits (315), Expect = 3e-31
 Identities = 72/253 (28%), Positives = 134/253 (52%), Gaps = 16/253 (6%)

Query: 2   YTEQLMPMAFEITDHLATTFSKVIET-----------DAGTDEKAITAMGLLTTMETVLN 50
           ++ +L P A ++   L  TF K+++            D+  D+K+I A+G+L T+ T++ 
Sbjct: 576 FSHELTPFASQLAKQLRNTFVKLMQETMDESTTVDDFDSLVDDKSIAAIGILNTLSTMIL 635

Query: 51  VMEDNPEIMAQLEKTVLRVVGHILHHNIIEYYEEAMTLL--CNLTAKSISEDMWKVLELL 108
            +E+  +++ ++E  +L ++  +L +NI + Y E   ++  C   +K IS  MW V E L
Sbjct: 636 SLENTVDVLREIEAILLPMINFVLDNNIFDVYAELFEIIDGCTFASKEISPIMWGVYEKL 695

Query: 109 YQVFEKEGFDYFTDMMPVLHNYVTVDTNAFLSNENHILAMFNMVKAVLNSD-AEDESEIY 167
            +V ++ G ++  +  P L N++T     F S  ++I  M +++  V NS+       + 
Sbjct: 696 QKVLKESGIEFVEEATPALSNFITYGGKEFASRPDYIAVMVDIIMQVFNSEHLAVNDRVS 755

Query: 168 AAKLLEVMVLQCAGKIDNCLPSFVELVLNRL--TRKVKTSELRTMLLQVLIAILYSNPQL 225
           A KL E+++L   G +D  +P+F+E+  N L  T K  +   R  LL+V+I  LY NP +
Sbjct: 756 ACKLTELLMLNYRGLLDQYVPAFIEVAGNLLLVTEKPTSQTYRVFLLEVIINALYYNPSM 815

Query: 226 LFSILDKLQEAVP 238
              +L+  Q  +P
Sbjct: 816 SLGVLEMHQWTLP 828



 Score = 31.1 bits (67), Expect = 0.38
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 260 NPQLLFSILDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLCVLGICTLLDMGPQR 318
           NP +   +L+  Q  +P       F   W  +   F  +HD+KL ++ I +++ +G Q+
Sbjct: 812 NPSMSLGVLEMHQWTLP-------FFALWFENIPSFTRVHDKKLSLVAILSVISLGAQQ 863


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/79 (20%), Positives = 37/79 (46%)

Query: 103 KVLELLYQVFEKEGFDYFTDMMPVLHNYVTVDTNAFLSNENHILAMFNMVKAVLNSDAED 162
           K ++L  Q  ++   +  T M   +H  +    ++FL  E H+  +   + A   +D  +
Sbjct: 343 KSIDLQCQTRKELILNEITVMRESIHPNIVTYLDSFLVRERHLWVVMEYMNAGSLTDIIE 402

Query: 163 ESEIYAAKLLEVMVLQCAG 181
           +S++  A++  + +  C G
Sbjct: 403 KSKLTEAQIARICLETCKG 421


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,818
Number of Sequences: 5004
Number of extensions: 81413
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 3
length of query: 515
length of database: 2,362,478
effective HSP length: 76
effective length of query: 439
effective length of database: 1,982,174
effective search space: 870174386
effective search space used: 870174386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)