GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002013-TA|BGIBMGA002013-PA|undefined
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)                  124   1e-28
SB_35859| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.18 
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)                   31   1.7  
SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6)             31   2.2  
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)                     31   2.2  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.9  
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.0  

>SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)
          Length = 692

 Score =  124 bits (300), Expect = 1e-28
 Identities = 62/128 (48%), Positives = 79/128 (61%)

Query: 132 TVDTNAFLSNENHILAMFNMVKAVLNSDAEDESEIYAAKLLEVMVLQCAGKIDNCLPSFV 191
           +V     L+    ++ +    K +L  D  ++ ++ AAKLLEV +LQC G +D  LP FV
Sbjct: 210 SVTAMGILNTVETMMHVLESSKEMLTEDPGEDDQVNAAKLLEVTILQCRGHMDQWLPFFV 269

Query: 192 ELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDKLQEAVPNASITQHFIKQWI 251
           E  L RLTR+VK SELRTM LQV IA LY N  LL SILDKLQ      ++T  F  QW+
Sbjct: 270 EAALERLTREVKGSELRTMCLQVAIAALYYNSPLLLSILDKLQFPNSQEAVTAQFFSQWV 329

Query: 252 HDTDCFMG 259
           HD DCF+G
Sbjct: 330 HDADCFLG 337



 Score = 92.7 bits (220), Expect = 6e-19
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 260 NPQLLFSILDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLCVLGICTLLDMGPQ-R 318
           N  LL SILDKLQ      ++T  F  QW+HD DCF+GLHDRK+ +LG C L D   +  
Sbjct: 300 NSPLLLSILDKLQFPNSQEAVTAQFFSQWVHDADCFLGLHDRKMFILGFCALFDTPKEVL 359

Query: 319 PN-LDEFIPKLLPSCLVLFDGLKRAY 343
           P  + +  P++LPS L++F GLKRAY
Sbjct: 360 PQVISQVSPRILPSILLVFTGLKRAY 385



 Score = 56.0 bits (129), Expect = 7e-08
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 424 IECYTTPLDDRDCPVDEYVKFKTTLSALSSTEPALYHALTSVLSEDQKKQLSAVFVLADQ 483
           +E YTT +D  +  +DEY+ FKTTL AL S  P  Y ++ + L+ +QK++L  VF  ADQ
Sbjct: 474 LEEYTTSIDGEN--MDEYIAFKTTLLALQSRNPEWYASMMNGLNNEQKQELHEVFTTADQ 531

Query: 484 RKA 486
           + A
Sbjct: 532 KAA 534



 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 22/61 (36%), Positives = 42/61 (68%), Gaps = 3/61 (4%)

Query: 4   EQLMPMAFEITDHLATTFSKVIE---TDAGTDEKAITAMGLLTTMETVLNVMEDNPEIMA 60
           EQ+  +A +I   LA TF ++++    D   DE+++TAMG+L T+ET+++V+E + E++ 
Sbjct: 176 EQVAGIAVDIAKELANTFLQLVDGEGDDERADERSVTAMGILNTVETMMHVLESSKEMLT 235

Query: 61  Q 61
           +
Sbjct: 236 E 236


>SB_35859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 155 VLNSDAEDESEIYAAKLLEVMVLQCAGKID 184
           +L  D  ++ ++ AAKLLEV +LQC G +D
Sbjct: 1   MLTEDPGEDDQVNAAKLLEVTILQCRGHMD 30


>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
          Length = 596

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 62  LEKTVLRVVGHILHHNIIEYYEEAMTLLCNLTAKSISEDMWKVLELLYQVFEKEGFDY-- 119
           L+   L  V   L  ++IEY   A   L N  + ++     + L++ +     +  DY  
Sbjct: 438 LDAIELITVYRSLIRSVIEYASAAFANLPNYLSDALENVQRRALKIAFPAMANKYRDYEL 497

Query: 120 FTDMMPVLHNYVTVDTNAFLSNENHILAMFNMV 152
           F D    +  Y  V    F  +ENH +  F +V
Sbjct: 498 FVDNNFYMDGYYKVFVTTFCKSENHEIRGFTVV 530


>SB_56515| Best HMM Match : Ribosomal_L30 (HMM E-Value=5.6)
          Length = 183

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 259 GNPQLLFSILDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLCVLGICTLLDMGPQR 318
           G P LL       +      ++    ++  +       G+HD   C+ G C L+DM P +
Sbjct: 49  GLPILLMQAYSSKKVVSKKQAVYAELLESTVQSLRAIKGVHDISRCLPGRCDLIDMAPMK 108


>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 674

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 25  IETDAGTDEKAITAMGLLTTMETVLNVMEDNPEIMAQLEKTVLRVVGHILHHNIIEYYEE 84
           I T A  D + +T   L    +  +N++ D  +++ Q+E          +    IEY+EE
Sbjct: 184 IRTVAELDRENVTQYELFVQAKDSVNLVSDLLKVVVQVEDVNDNPPVFSMPGYTIEYWEE 243

Query: 85  AMTLLCNLTAKSISEDMWKVLELLYQVFEKEGFDYFT 121
           +      L  K+I  D+     +LY + E    DY T
Sbjct: 244 SPEGTSILQVKAIDADIGDNAAVLYSIVENV-TDYVT 279


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 205 SELRTMLLQVLIAILYSNPQLLFSILDKLQEAVPNAS-ITQHFIKQWIHDTDCFMGNPQL 263
           S  R+ L   L++  + NP ++F    KL   VP+AS   Q F        DC  G   +
Sbjct: 905 SAKRSALFASLVS--HHNPDIIFGCESKLNRDVPSASAFPQGFTIYRKERQDCGGGGTFI 962

Query: 264 --LFSILDKLQEAVPNASITQHF 284
             L  + DK +++ PN  I   F
Sbjct: 963 AALLRVFDKQKKSHPNVVIAGDF 985


>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 119 YFTDMMPVLHNYVTVDTNAFLSNENHILAMFNMVKAVLNSDAEDESEIYAAKLLEVMVLQ 178
           YF      L + + V  + F+  ++ +L     +     S  E    I  A  L+V +++
Sbjct: 4   YFNRQCITLLSGLGVPDDEFIRLQDKMLMDLASMLLYETSALESLGRISIAGGLKVSLIR 63

Query: 179 CAGKIDNCLPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDK 232
            +G +  C P F  ++L      +  S L  +L +  IAI  S+ +LL  +LD+
Sbjct: 64  HSGIVVTCEPFFRSMLL-----AIYRSRLGDLLRRARIAIPESHGRLLMGVLDE 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,078
Number of Sequences: 59808
Number of extensions: 533158
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 11
length of query: 515
length of database: 16,821,457
effective HSP length: 85
effective length of query: 430
effective length of database: 11,737,777
effective search space: 5047244110
effective search space used: 5047244110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)