Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002013-TA|BGIBMGA002013-PA|undefined
(515 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ... 116 5e-26
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ... 71 2e-12
At5g47690.1 68418.m05887 expressed protein 34 0.26
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 31 1.4
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 31 1.8
At3g61690.1 68416.m06913 expressed protein 30 4.2
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 29 5.6
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 9.8
At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containi... 29 9.8
>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1040
Score = 116 bits (278), Expect = 5e-26
Identities = 64/238 (26%), Positives = 134/238 (56%), Gaps = 10/238 (4%)
Query: 2 YTEQLMPMAFEITDHLATTFSKVIETDAGTDEK----AITAMGLLTTMETVLNVMEDNPE 57
+ E++ P AF + +LA F + + T D+ A+ A+G L + T+L + P+
Sbjct: 575 FGEEMAPFAFGLCQNLAAAFWRCLNTSEANDDSDDMGALAAVGCLRAISTILESVSSLPQ 634
Query: 58 IMAQLEKTVLRVVGHILHHNIIEYYEEAMTLLCNLT--AKSISEDMWKVLELLYQVFEKE 115
+ ++E T+L ++ +L + E +EE + + +T + SIS D+W + L+ +
Sbjct: 635 LFVEIEPTILPIMQKMLTTDGQEVFEEVLEIASYMTFYSPSISLDIWSLWPLMVEALVDW 694
Query: 116 GFDYFTDMMPVLHNYVTVDTNAFLS--NENHILAMFNMVKAVLNSDAEDESEIYAA-KLL 172
G D+F +++ + N+++ T FL+ ++ +++N++ ++ ++SEI +A KL+
Sbjct: 695 GIDFFPNILVPMDNFISRGTAHFLTCKEPDYQQSLYNVLSTLMTDRNIEDSEIESAPKLI 754
Query: 173 EVMVLQCAGKIDNCLPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSIL 230
EV+ C G++D + ++ L ++RL R +TS ++++L+QV+ +LY NP L +L
Sbjct: 755 EVVFQNCKGQVDQWVEPYLRLTVDRLQR-AETSYVKSLLIQVVANMLYYNPGLTLGVL 811
>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1112
Score = 70.5 bits (165), Expect = 2e-12
Identities = 40/165 (24%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 73 ILHHNIIEYYEEAMTLLCNLTAKS--ISEDMWKVLELLYQVFEKEGFDYFTDMMPVLHNY 130
++H + +EE + ++ +T S IS +MW + L+ + D+F +++ LHNY
Sbjct: 728 VIHSLWPDVFEEVLEIVSYITTFSPTISLEMWSLWPLMMEALVDWAIDFFPNILVPLHNY 787
Query: 131 VTVDTNAFLS--NENHILAMFNMVKAVLNSDAEDESEIYAA-KLLEVMVLQCAGKIDNCL 187
++ T +L+ ++ ++N++ ++ + D+S++ A KLL +++ C G++D +
Sbjct: 788 ISRGTGHYLTCKEPDYQQNLWNVISVLMANKNIDDSDLEPAPKLLGIVLQTCKGQVDQWV 847
Query: 188 PSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSILDK 232
++ + L+RL R + S + +L++V+ Y N L IL +
Sbjct: 848 EPYLRITLDRL-RGAEKSSFKCLLVEVVANAFYYNTPLALGILQR 891
Score = 44.4 bits (100), Expect = 2e-04
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 2 YTEQLMPMAFEITDHLATTFSKVIETDAGTDEK----AITAMGLLTTMETVLNVMEDNPE 57
+ E++ P A + +LA+ F + I+TD G DE A+ A+G L + T+L + P
Sbjct: 609 FGEEISPYALGLCQNLASAFWRCIDTDNGDDETDDAGALAAVGCLRAISTILESISSLPH 668
Query: 58 IMAQLEKTVLRVVGHIL 74
+ Q+E +L ++ +L
Sbjct: 669 LYGQIEPQLLPIMRKML 685
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 33.9 bits (74), Expect = 0.26
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 268 LDKLQEAVPNASITQHFIKQWIHDTDCFMGLHDRKLCVLGICTLLDMGPQRPNLD-EFIP 326
+DK +E VP + H IKQ TD + +C LG+ + + + P+L E P
Sbjct: 1017 IDKEREYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITP 1076
Query: 327 KLLPSCL 333
LP L
Sbjct: 1077 VSLPPTL 1083
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 10 AFEITDHLATTFSKVIETDAGTDEKAITAMGLLTTMETVLNVMEDNPEIMAQLEKTVLRV 69
+F++ D L + + + GT KA+ G ++ + +VM E Q+E V
Sbjct: 343 SFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVMASKKEFETQME-----V 397
Query: 70 VGHILHHNII 79
VG I H N+I
Sbjct: 398 VGKIKHPNVI 407
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
identical to pTOR [Arabidopsis thaliana] GI:12002902;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 171 LLEVMVLQCAGKIDNCLPSFVELVLNRLTRKVKTSELRTMLLQVLIAILYSNPQLLFSIL 230
LLE + C G I + S VE + L + +S L + L+ L I S P LL ++
Sbjct: 394 LLEAVA--CVGNIAKAMGSTVETHVRDLLDVMFSSSLSSTLVDALDQITISIPSLLPTVQ 451
Query: 231 DKLQEAVPNASITQHF 246
D+L + + H+
Sbjct: 452 DRLLDCISLVLSKSHY 467
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 133 VDTNAFLSNENHILAMFNMVKAVLNSDAEDESEIYAAKLLEVMVLQCAGKIDNCL 187
+D AF +N+N + N+V+ +L + ++E+ + K EV +Q KI CL
Sbjct: 100 IDLTAFSANQNLKDSWANLVRDMLEKEEKNENAEFHVK--EVQYIQAEVKIIKCL 152
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 29.5 bits (63), Expect = 5.6
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 28 DAGTDEKAITAMGLLTTMETVLNVMEDNPEIMAQLEKTVLRVVGHILHHNIIEYYEEAMT 87
D T A+G + T E ++N++ D P+I + T + + H +++Y
Sbjct: 119 DGNTPLSFAAALGDIETAEMLINMIRDLPDISNEKTMTPIHIAALYGHGEMVQY------ 172
Query: 88 LLCNLTAKSISEDMWKVLELLYQVFEKEGFDYFTDM 123
L + K +++ + L L + + + + F D+
Sbjct: 173 LFSKTSIKDLNDQQY--LNLFHTMISADIYGVFADV 206
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 28.7 bits (61), Expect = 9.8
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 89 LCNLTAKSISEDMWKVLELLYQ--VFEKEGFDYFTDMMPVLHNYVTVDTNA----FLSNE 142
+ N+T S+ + K+ E L Q + KE + + + L + +D N L +
Sbjct: 181 MLNITINSLQAERKKLQEELSQNGIVRKE-LEVARNKIKELQRQIQLDANQTKGQLLLLK 239
Query: 143 NHILAMFNMVKAVLNSDAEDESEIYAAKLLEVMVLQCAGK 182
H+ ++ + +N D E E ++ A + LEV V++ K
Sbjct: 240 QHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQVMELKRK 279
>At1g74630.1 68414.m08643 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 643
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 83 EEAMTLLCNLTAKSISEDMWKVLELLYQVFE----KEGFDYFTDMMPVLH 128
EEA+ L +TA ++ D + LL+ +EG DYF++M V H
Sbjct: 353 EEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYH 402
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,393,307
Number of Sequences: 28952
Number of extensions: 397268
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 15
length of query: 515
length of database: 12,070,560
effective HSP length: 84
effective length of query: 431
effective length of database: 9,638,592
effective search space: 4154233152
effective search space used: 4154233152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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