Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 155 9e-39
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 67 3e-12
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 64 2e-11
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 35 0.015
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 31 0.24
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 30 0.41
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 29 0.95
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 28 1.3
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 2.2
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 27 2.9
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 26 5.1
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.7
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.9
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 25 8.9
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 25 8.9
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 155 bits (375), Expect = 9e-39
Identities = 82/274 (29%), Positives = 146/274 (53%), Gaps = 11/274 (4%)
Query: 6 LIEILRATI--DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNL 63
L+E AT+ DPN R +AE L Q+ K F A+LQ++ ++++P +QA V+YLKN
Sbjct: 3 LVEHFDATLSADPNTRTKAELSLKQLEKEPSFVLAVLQLLSSQEISLPTQQAAVIYLKNR 62
Query: 64 ITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFP 123
++ W + P P +I E+ +A+ R I+ ++Q+P R L L I+ DFP
Sbjct: 63 VSRSWSSID---DAPSPLDIPEEQKALFRQNILPVLLQSPMSTRSHLMAILNIILSTDFP 119
Query: 124 ERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYN 183
E W + + + + L C ++L K Y + + +++ + + L P I
Sbjct: 120 EYWPGFSEYTSNLVHSTERCEVYAGLICFHELAKVYRWRLDDRQRDIGPLVAALFPTILQ 179
Query: 184 L---IVNLEPDQSVESILIQKQILKCFYALTKYILPLDLITRDAFTKWMVVLRSIMERPV 240
L ++NLE + S E + + ILK F ++ LP +L+ D W+ +L +++++P+
Sbjct: 180 LGQGLINLEDNDSAEMLRL---ILKTFKSVIALELPPELLANDMILSWIQLLLAVVQKPL 236
Query: 241 PDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
P++ + ++ + R W KCKKWA ++L R+F R
Sbjct: 237 PESLMSLEPEVRQSHVWHKCKKWAYYSLNRIFTR 270
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 66.9 bits (156), Expect = 3e-12
Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 5 KLIEILRATIDPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLI 64
KL+E +++ DPN R QAE L + K FA L + + ++P+RQ ++YL+ I
Sbjct: 8 KLLEQVQSA-DPNSRIQAELGLRDLEKYHDFAAKLTDIA-SSGASVPLRQGSLIYLQRYI 65
Query: 65 TSGWQDK-EREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKH-DF 122
W E+ + PIP E + +R+ ++ +V ++ ++I + D+
Sbjct: 66 VHHWSPLFEQFQDGPIP---DENVKKHVRETLLHLLVSLDNFTLIKAVAYAVSLIANVDY 122
Query: 123 PERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIY 182
P+ W ++V + LQ+ + NS +L L +L+ + + E++ +I L ++Y
Sbjct: 123 PDEWPEVVPAVLHLLQSTNENSINASLDVLDELV---DESLVEEQFFIIAPQ--LASILY 177
Query: 183 NLIVNLEPDQSVESILIQKQILKCFYALTKYI 214
I + P+ S+ ++Q + +K F + + I
Sbjct: 178 QFIFSAPPNDSMR--MLQARGIKLFRSCLELI 207
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 64.5 bits (150), Expect = 2e-11
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 9 ILRATIDPNQRQQAEEQLSQIH-KIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSG 67
+L T++P + AEE L + FA LL +V ++ V+I ++ A +Y KN I
Sbjct: 7 LLARTLNPTTSKSAEEALKVWELQDSSFALKLLNIVAEDTVDINIKLAASLYFKNYIKKH 66
Query: 68 WQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWT 127
W + EEG I I ++ +I+ I+ ++++ II+VQL + I DFP+RW
Sbjct: 67 W---DSEEGASI--RISDEVAELIKREIINLMLKSTTIIQVQLGEVIGYIANFDFPDRWD 121
Query: 128 QIVDKIHIFLQNPDANSWMGALQCLYQLIKNY 159
++ + L D N+ + L + + K +
Sbjct: 122 TLLPDLISKLSAVDMNTNIAVLSTAHAIFKRW 153
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 34.7 bits (76), Expect = 0.015
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKERE 74
DP + AE L+ K GF L + + ++ +R ++ L+N I W+ +
Sbjct: 17 DPIAVKDAEGHLNNWKKEPGFFGKLYSIFLDKQNDMSLRWIAIIQLRNSIDIIWRKNTK- 75
Query: 75 EGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWT----QIV 130
++ ++R IR + +++ ++ +Q + + I + D+P W ++
Sbjct: 76 ------MSLLPEERDFIRCNALLGSIKSENLLSIQNALVVSRIARLDYPTEWPSLFHDLL 129
Query: 131 DKIHIFLQNPDANSWMGALQCLYQLIK 157
K+ L D + + L L+ +IK
Sbjct: 130 GKLQQSLGTGDYDVALRLLITLHHIIK 156
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 30.7 bits (66), Expect = 0.24
Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 126 WTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLI 185
+TQIV ++ N DA + AL C + + ++ +E + ++A+++++P++
Sbjct: 93 YTQIVP--YLQKNNDDAPTIRCALNCTQEFLLSFS---NESKELYLKAVDVVMPLLVKFS 147
Query: 186 VNLEPDQSVESILIQKQILKCFYALTKYILP 216
V+L P SI + + + + + L ++ P
Sbjct: 148 VDLRPKVRKISIQVLQTLKQKYDGLLPHLYP 178
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 29.9 bits (64), Expect = 0.41
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 93 DIIVE-AIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQC 151
D++++ A+ + + VQ VCL+ I + FP+ + KI+ + D+ + + +Q
Sbjct: 363 DLMMDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFA-KINERFEEKDSANDLLKMQ- 420
Query: 152 LYQLIKNYEYHISEKRTPLIEA-MNLLLPMI 181
+Y L YE +++KR+ ++A + +++ M+
Sbjct: 421 MYFLDVAYELSLAKKRSSKVQAGLGIIMYML 451
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 28.7 bits (61), Expect = 0.95
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 113 CLKTIIKHDFPERWTQIVD----KIHIFLQNPDAN--SWMGALQCLYQLIKN-YEYHISE 165
C++ +H W ++ + K +F N + + S++G+ Y++ K+ + I+
Sbjct: 831 CIEVRTRHRLHIPWLKMPNFDFKKNQVFFGNYEDSKLSFIGSNHTRYRIDKDEFSSGIAS 890
Query: 166 KRTPLIEAMNLLLPMIY-NLIVNLEPDQSVESILIQKQILKC 206
R L+ ++ P+I ++I+ L+P + S LI + LKC
Sbjct: 891 IRGTLMSSVLPDAPLIIRDMIIRLKPPKFCNSALIDPEFLKC 932
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 18 QRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGE 77
++QQA++ L+Q A + +++ + + L LIT+ W+ +E+
Sbjct: 30 EQQQAQQVLTQFQAHPD-AWSQAYSILEKSEYPQTKYIALSVLDKLITTRWKMLPKEQRL 88
Query: 78 PIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKI 133
I I MI++ E ++Q + +L + L I+K ++P W + +I
Sbjct: 89 GIRNYIVA---VMIKNSSDETVLQQQKTFLNKLDLTLVQILKQEWPHNWPNFIPEI 141
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 169 PLIEAMNLLLPMIYNLIVNLEPDQSVESILIQ-KQILKCFYALTKYI 214
PL EAM L P+ ++ I + + S L + K I+ C+YALT I
Sbjct: 634 PLTEAMRFLQPICWHKIKGWGFLKILSSKLYKLKGIIFCYYALTNNI 680
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 178 LPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLDLITR-DAFTKWMVVLRSIM 236
L Y+++ E +Q+ + KQI K + L KY L R +T W+ + ++
Sbjct: 50 LTSFYSIVEKCEGEQNEWAFKALKQITKINFQLKKYDDMLQSYQRLLGYTNWLSITKNYS 109
Query: 237 ERPV 240
E+ +
Sbjct: 110 EKSI 113
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 128 QIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAM 174
Q +K + QNPD LQ + +IKN I++ L++ +
Sbjct: 1005 QFFEKAYKLFQNPDLEVSQETLQVIISVIKNRRSCIADVYNELLQGL 1051
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 133 IHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMN-----LLLPMIYNLIVN 187
+++ LQNP S + + + + + S+ L+ +N L LP +Y LIVN
Sbjct: 7 LNLMLQNP---SGIDKIAAILVNVARLDPASSKSTAQLVSMLNEFRCILRLPGLYKLIVN 63
Query: 188 LEPDQSVESIL 198
D S E+ +
Sbjct: 64 FRKDSSPETYM 74
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 10 LRATIDPNQRQQAEEQLSQIHKIIGFAPAL 39
LR + + ++E LSQ+HKI+G A L
Sbjct: 2732 LRRLFELVKNHYSQELLSQVHKIVGSADFL 2761
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 241 PDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
P++ VD+D+R L W C V+T+Y L ++
Sbjct: 27 PNSLNAVDDDKRTPLHW-ACSVGKVNTIYFLLKQ 59
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 143 NSW-MGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVNLEPDQSVESILIQK 201
N W MG L+ L +L Y ++ R L + LLL + + N+EP + + L+QK
Sbjct: 1026 NPWLMGILKLLVEL-----YQFADFRLNLKFEIELLLNNLNVKMDNIEPSEMYRNHLVQK 1080
Query: 202 QILK 205
L+
Sbjct: 1081 ADLE 1084
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 215 LPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVD 248
LP+D +T D F K V + E +PD + +D
Sbjct: 279 LPVDFVTADKFDKDAKVGSATAEEGIPDGWMGLD 312
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 224 AFTKWMVVLRSIMERPVPD 242
A KW LR +ME PVP+
Sbjct: 223 AVAKWQKALRYLMEYPVPN 241
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,409
Number of Sequences: 5004
Number of extensions: 53130
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 19
length of query: 274
length of database: 2,362,478
effective HSP length: 72
effective length of query: 202
effective length of database: 2,002,190
effective search space: 404442380
effective search space used: 404442380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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