Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
(274 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ... 157 8e-39
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ... 81 6e-16
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ... 70 2e-12
At2g46520.1 68415.m05798 cellular apoptosis susceptibility prote... 57 1e-08
At3g08960.1 68416.m01047 importin beta-2 subunit family protein ... 45 6e-05
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 33 0.27
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ... 32 0.48
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 31 0.84
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex... 31 0.84
At1g23230.1 68414.m02906 expressed protein 30 1.5
At3g17340.1 68416.m02216 importin-related contains Pfam profile ... 29 3.4
At1g58227.1 68414.m06616 hypothetical protein 28 7.8
At1g43630.1 68414.m05009 expressed protein 28 7.8
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 7.8
>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1040
Score = 157 bits (381), Expect = 8e-39
Identities = 97/281 (34%), Positives = 147/281 (52%), Gaps = 13/281 (4%)
Query: 1 MDTRKLIEILR-ATIDP--NQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGV 57
MD L ILR A + P ++R+ +E+QL+Q+ LLQ+ + + ++ VRQ
Sbjct: 1 MDLHSLALILRTAALSPIPDERKVSEQQLNQLEHTPQHLVRLLQIAVDGNCDMAVRQIAS 60
Query: 58 VYLKNLITSGWQDKEREEGEPI-PFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKT 116
+ KNLI W ++ G + I E D+ ++RD I+ + Q P ++R QL LKT
Sbjct: 61 IQFKNLIAKNWSPEDC--GPAVRQQQIFESDKELVRDNILVYVTQVPTLLRSQLGESLKT 118
Query: 117 IIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNL 176
II D+PE+W +++D + LQN GAL L L + YE+ E+RTP+ +
Sbjct: 119 IIYADYPEQWPRLLDWVKYNLQNQQI---YGALFVLRILSRKYEFKSDEERTPVSRIVEE 175
Query: 177 LLPM---IYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLDLITRDAFTKWMVVLR 233
P I+N ++ + P+ S+E + K I K F++ LP L + F WMV+
Sbjct: 176 TFPQLLTIFNGLIQI-PNPSLEIAELMKLICKIFWSSIYLELPRQLFDLNVFNAWMVLFL 234
Query: 234 SIMERPVPDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
S+ ERPVP +D + R WWK KKW VH L RL+ R
Sbjct: 235 SVSERPVPVEGQPMDPELRKSWGWWKVKKWTVHILNRLYSR 275
>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1112
Score = 81.4 bits (192), Expect = 6e-16
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKERE 74
+P++R+ AE+ L+Q H +LQ+++ ++ VRQ+ ++ KN I W+ +
Sbjct: 18 NPDERRAAEQSLNQ-HTPQHLI-RILQIIVDGGSDLSVRQSASIHFKNFIAKHWEPHSGD 75
Query: 75 EGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIH 134
+ +P D+ ++R+ I+ + Q P I+RVQ+ CLKTII D+PE+W +++D +
Sbjct: 76 QNIILP-----SDKNVVRNQILVFVSQVPPILRVQMGECLKTIIYADYPEQWPELLDWVK 130
Query: 135 IFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTP 169
LQ P GAL L L YE IS +P
Sbjct: 131 QNLQKPQV---YGALFVLRILSSKYEEFISLLPSP 162
Score = 65.7 bits (153), Expect = 3e-11
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 159 YEYHISEKRTPLIEAMNLLLPMIYNLIVNLE--PDQSVESILIQKQILKCFYALTKYILP 216
+ + E R P+ + P + N+ NL + S+E K I K F++ LP
Sbjct: 192 FRFKSDEDRAPIHRVVEETFPHLLNIFNNLVHVENPSLEVADHIKLICKIFWSCIYLELP 251
Query: 217 LDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
L + F WM + +I+ERPVP D + R WWK KKW H L RL+ R
Sbjct: 252 RPLFDPNFFNAWMGLFLNILERPVPVEGQPEDPELRKSWGWWKAKKWIAHILNRLYTR 309
>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
similar to Importin9 isoform 1 [Mus musculus]
GI:15186756; contains Pfam profile PF03810:
Importin-beta N-terminal domain
Length = 931
Score = 69.7 bits (163), Expect = 2e-12
Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 2 DTRKLIEILRATIDPNQ--RQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQ---AG 56
D + L+ L A++DPNQ R AE L+Q GF AL +V D+++ +RQ +
Sbjct: 6 DQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQISFSS 65
Query: 57 VVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKT 116
V LK I W +E EE P + +++A+IR ++ ++ + I + + + +
Sbjct: 66 AVLLKQFIKKHW--RENEEAFEYPL-VSSEEKALIRGQLLGSLDDSHRKICTAISMDISS 122
Query: 117 IIKHDFPERWTQIVDKIHIFLQNP-DANSWMGALQCL 152
I +D+PE W ++V + + +P + N GAL+CL
Sbjct: 123 IATYDWPEEWPELVPFLLKLISDPSNTNGVHGALRCL 159
>At2g46520.1 68415.m05798 cellular apoptosis susceptibility protein,
putative / importin-alpha re-exporter, putative similar
to cellular apoptosis susceptibility protein [Homo
sapiens] GI:3598795, SP|Q9ERK4 Importin-alpha
re-exporter (Chromosome segregation 1-like protein)
(Cellular apoptosis susceptibility protein) {Mus
musculus}; contains Pfam profiles PF03810: Importin-beta
N-terminal domain, PF03378: CAS/CSE protein C-terminus
Length = 972
Score = 57.2 bits (132), Expect = 1e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 16 PNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREE 75
P R+ AE LS + A+L++V + ++ R A V KN + S W
Sbjct: 23 PEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTRHAAAVNFKNHLRSRWHPAGDSG 82
Query: 76 GEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHI 135
PI + ++ I+ +IV ++ A I+ QL L I KHDFP+ W ++ ++
Sbjct: 83 ISPIV----DSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPKAWPALLPELIA 138
Query: 136 FLQNP----DANSWMGALQCLYQLIKNYEY 161
LQN D S G L + K + Y
Sbjct: 139 NLQNAALAGDYVSVNGILGTASSIFKKFSY 168
>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
similarity to Lph2p [Saccharomyces cerevisiae]
GI:1163089; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 754
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDV--NIPVRQAGVVYLKNLITSGWQDKE 72
D R+ AE LS GF L++V+ D+ ++ VR VY KN I W+ +
Sbjct: 22 DETVRRPAEAALSLSESRPGFCSCLMEVIASKDLVSHVDVRLMASVYFKNSINRHWKSRR 81
Query: 73 REEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDK 132
+++ ++++ +R ++ + + I L V + I + D+P W +
Sbjct: 82 NS------WSMSNEEKSHLRQKLLSHLREENYQIAEMLAVLISKIARFDYPREWPDLFSV 135
Query: 133 IHIFLQNPDANSWMGALQCLYQLIK 157
+ L + D + L++ +K
Sbjct: 136 LAQQLHSADVLASHRIFLILFRTLK 160
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 32.7 bits (71), Expect = 0.27
Identities = 56/288 (19%), Positives = 119/288 (41%), Gaps = 40/288 (13%)
Query: 5 KLIEILRATIDPNQ---RQQAEEQLSQIHKIIGFAPALLQVVMQND-VNIPVRQAGVVYL 60
++ +L I P+ + Q +QL + F L+ ++++ + ++ VRQA + L
Sbjct: 17 EICSLLEQQISPSSVVDKSQIWKQLQHFSQFPDFNNYLVFILVRAEGKSVEVRQAAGLLL 76
Query: 61 KNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKH 120
KN + + +E ++ I+ ++ + A IR + + I+
Sbjct: 77 KNNLRGAYPSMTQE------------NQKYIKSELLPCLGAADRNIRTTVGTIISVIVNI 124
Query: 121 DFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIE-AMNLLLP 179
+ W +++ + L + D N GA+ L ++ ++ + + + L E +N+ LP
Sbjct: 125 EGVSGWHELLPALVTCLDSNDLNHMDGAMDALSKICEDIPHVLDTEVPGLAERPINIFLP 184
Query: 180 MIYNLIVNLEPDQSVESIL---IQKQIL----KCFYALTKYILPLDLITRD--------- 223
+ + P S+ + + + I+ + +L KY+ L ++ D
Sbjct: 185 RLLQFFQS--PHASLRKLALGSVNQYIIIMPAALYNSLDKYLQGLFVLANDPVPEVRKLV 242
Query: 224 --AFTKWMVVLRSIME---RPVPDTTLQVDEDERMELPWWKCKKWAVH 266
AF VL S +E R V + LQV+ D E+ C+ W+ +
Sbjct: 243 CAAFVHLTEVLPSSIEPHLRNVMEYMLQVNRDPDEEVSLEACEFWSAY 290
>At4g27640.1 68417.m03973 importin beta-2 subunit family protein
low similarity to importin 4 GI:18700635 from [Homo
sapiens]
Length = 1048
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGW 68
D + R+QAE+Q+ ++ K PAL+Q ++ VRQ V L+ IT W
Sbjct: 16 DNDARRQAEDQIKRLAKDPQVVPALVQ-HLRTAKTPNVRQLAAVLLRKRITGHW 68
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 54 QAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQ 109
Q VYL + T+GW ++ + P +I + ++++R ++ ++ A EII+ +
Sbjct: 358 QGRTVYLVD--TAGWLERTERDKGPASLSIMQSRKSLMRAHVIALVLDAEEIIKAK 411
>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510
Length = 1075
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 40 LQVV--MQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVE 97
LQVV +QN ++ + + L+ +I W E+ + + I E +++ E
Sbjct: 52 LQVVHILQNTNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISE---VIVQLSSNE 108
Query: 98 AIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIV 130
A ++ + +L V L I+KHD+P +WT +
Sbjct: 109 ASFRSERLYVNKLNVILVQIVKHDWPAKWTSFI 141
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 180 MIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLD-----LITRDAFTKWMVVLRS 234
+++++ V+L+ QS+E++L + F+ T +LPLD LI RD +++ S
Sbjct: 1002 LLHHVHVDLQQGQSLEAVLDKAGANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAMS 1061
Query: 235 IMERP 239
+++ P
Sbjct: 1062 LLKTP 1066
>At3g17340.1 68416.m02216 importin-related contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 822
Score = 29.1 bits (62), Expect = 3.4
Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 5 KLIEILRATIDPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLI 64
+L++ +ID ++A E L + + P L + N ++ A YLKN
Sbjct: 13 RLLDQTLTSIDGVSVREATEALDLLSTKLPHFPYRLLSIASGSENPSLKVAAATYLKNFT 72
Query: 65 TSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQA-PEIIRVQLCVCLKTIIKHDFP 123
+ EG I E + +D ++ A++QA P +++V L L ++ +F
Sbjct: 73 ----RKSTGTEG-----TISEVSKE-FKDQLLLALLQAEPAVLKV-LLELLHIVVVSEFV 121
Query: 124 ER--WTQIVDKIHIFLQ-----NPDANSW--MGALQCLYQLIKNYEYHISEK 166
+ W ++V ++ ++ + +SW + AL L ++K ++Y + K
Sbjct: 122 RKNAWPKLVPELRSAIEKSSLISSSNSSWSTVNALMVLLTVVKPFQYFLQPK 173
>At1g58227.1 68414.m06616 hypothetical protein
Length = 1323
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 3 TRKLIEILRATIDPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKN 62
T ++IE++ + +D N Q + L I+GF LLQ + +N+ + + +L N
Sbjct: 756 TAEVIELIASVLDENPANQQQMHLLAGFPILGF---LLQSIQPKQLNLET-LSSLKHLFN 811
Query: 63 LITS 66
+I+S
Sbjct: 812 VISS 815
>At1g43630.1 68414.m05009 expressed protein
Length = 383
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 4 RKLIEILRATIDPNQRQQAEEQLSQIHKII 33
+KLIEI+ + +D NQRQ E ++ + K +
Sbjct: 129 QKLIEIVISALDTNQRQLGEGEIHRAKKAL 158
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 33 IGFAPALLQVVMQNDVNIPVRQAGV--VYLKNLITSG-WQDKEREEGEPIPFNI 83
+G ALL+ + +DV IPV G+ V+ K+++ +G +K++E + F++
Sbjct: 848 LGSLEALLEFLKSSDVKIPVSGIGIGPVHKKDIMKAGVMLEKKKEFATILAFDV 901
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,402,035
Number of Sequences: 28952
Number of extensions: 257526
Number of successful extensions: 793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 17
length of query: 274
length of database: 12,070,560
effective HSP length: 80
effective length of query: 194
effective length of database: 9,754,400
effective search space: 1892353600
effective search space used: 1892353600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -