Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 146 1e-35
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 139 2e-33
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 49 5e-06
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 45 8e-05
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 31 1.0
04_03_0578 - 17463545-17464417 29 4.0
01_06_0162 + 27117939-27118466,27119782-27119970,27120068-271201... 29 4.0
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 29 5.3
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 29 5.3
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 29 5.3
02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333 29 5.3
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 28 7.1
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 28 7.1
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188... 28 7.1
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 9.3
01_04_0046 - 15400890-15403097 28 9.3
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 146 bits (355), Expect = 1e-35
Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 8/238 (3%)
Query: 39 LLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEA 98
LLQ+++ + ++ VRQ ++ KN + W + EE IP E D++M+R+ I+
Sbjct: 63 LLQIIVDGNCDMAVRQFASIHFKNFVAKNWSPTDPEEKHIIP----ESDKSMVRENILGF 118
Query: 99 IVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 158
+ Q P ++R QL +KT+I D+PE+W ++ + L++ D GAL L L +
Sbjct: 119 VTQLPPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQD--QIFGALYVLRILARK 176
Query: 159 YEYHISEKRTPLIEAMNLLLPMIYNLIVNLEP--DQSVESILIQKQILKCFYALTKYILP 216
YE+ ++R PL + + P + N++ NL P + +E + K I K F++ +P
Sbjct: 177 YEFKSEDERIPLYQIVEECFPRLLNILRNLVPISNPPIEVADLIKLICKIFWSSIYLEIP 236
Query: 217 LDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
L + F WM++ +++ERPVP +D D R WWK KKW +H L RL+ R
Sbjct: 237 KQLFDPNVFNTWMILFLNLLERPVPVEGQPLDPDARKSWGWWKVKKWIIHILNRLYTR 294
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 139 bits (337), Expect = 2e-33
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 8/238 (3%)
Query: 39 LLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEA 98
LLQ+++ ++ VRQ ++ KN + W + EE + I E D+ M+R+ I+
Sbjct: 12 LLQIIVDGSCDMAVRQVASIHFKNFVAKNWSPNDPEESQ----KISESDKLMVRENILGF 67
Query: 99 IVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 158
IVQ P ++R QL +KTII D+PE+W ++ + L++ N GAL L L +
Sbjct: 68 IVQVPPLLRAQLGESIKTIIHSDYPEQWPVLLHWVTHNLESE--NQIFGALYVLRVLSRK 125
Query: 159 YEYHISEKRTPLIEAMNLLLPMIYNLIVNLEP--DQSVESILIQKQILKCFYALTKYILP 216
YE+ E+R PL + P + ++ L + +E + K I K F++ +P
Sbjct: 126 YEFKSEEERIPLYHIVEETFPRLLSIFSKLVQIVNPPIEVADLIKLICKIFWSSIYLEIP 185
Query: 217 LDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWWKCKKWAVHTLYRLFER 274
L + F WM + +++ERPVP +D D R WWK KKW +H L RL+ R
Sbjct: 186 KQLFDPNVFNAWMSLFINLLERPVPVEGQPLDPDVRKSWGWWKVKKWTIHILNRLYTR 243
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 48.8 bits (111), Expect = 5e-06
Identities = 54/245 (22%), Positives = 90/245 (36%), Gaps = 20/245 (8%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKERE 74
D R+ AE+ + GF ALL + + R A V KNL+ W +
Sbjct: 22 DAAARRAAEQSIESAKCSPGFGLALLGLASSPRHDPQSRLAASVQFKNLLRRRWPKPSPD 81
Query: 75 EG-EPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKI 133
G + ++ D A+I+ +++ ++ AP +I+ QL L DFP RW ++ I
Sbjct: 82 GGGDDDADHLPPSDCAIIKANLLQLLLTAPPLIQAQLSEALAAAAASDFPARWESLLPSI 141
Query: 134 HIFLQN-------PDANSWMGALQCLYQLIKN----------YEYHISEKRTPLIEAMNL 176
L P NS + A L+ +N +Y + L+E
Sbjct: 142 VSSLGTALSAGDIPATNSLLAAAASLFSRFRNAFDSNTIRLDLKYCLENFAAALLEVFLS 201
Query: 177 LLPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLDLITRDAFTKWMVVLRSIM 236
+ + P +S + + FY+L LP D +WM R+ +
Sbjct: 202 TSRRLQAAAPTVTPPESRPVFECLRLCCEIFYSLNSIDLP--EFFEDHMREWMTEFRAFL 259
Query: 237 ERPVP 241
P
Sbjct: 260 TTSYP 264
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 44.8 bits (101), Expect = 8e-05
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQN--DVNIPVRQAGVVYLKNLITSGWQDKE 72
D RQ AE L+Q GF LL ++ + + VR V+LKN +T W++
Sbjct: 22 DAATRQPAEALLAQCEARQGFCSCLLAIITSRGEESDDDVRLLAAVHLKNCVTRCWRNSV 81
Query: 73 REEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDK 132
I +++ IR ++ + + I +QL + I+ D+P+ W+ +
Sbjct: 82 DSPA------IDNEEKVYIRKSLLLNMREENGKIALQLAALIARIVYFDYPKEWSDVFSV 135
Query: 133 IHIFLQNPDANSWMGALQCLYQLIK 157
+ LQ D + L++ +K
Sbjct: 136 LAQQLQTSDVFTSYQVSTVLFRSLK 160
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 15 DPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGW 68
D + R+QAEEQ+ ++ + PAL+ ++ VRQ V L+ ITS W
Sbjct: 16 DNDARRQAEEQIRRLARDPQVVPALVH-HLRTAKTPNVRQLAAVLLRKKITSHW 68
>04_03_0578 - 17463545-17464417
Length = 290
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 122 FPERWT-QIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPM 180
+ +RW+ + +D +H FL+ +AN G + C KN + + S RT L
Sbjct: 7 YADRWSKEFIDGVHYFLRVAEANRHKGFICCPCNKCKNQKEY-SASRTIHFHLFELGFMS 65
Query: 181 IYN 183
YN
Sbjct: 66 SYN 68
>01_06_0162 +
27117939-27118466,27119782-27119970,27120068-27120159,
27121126-27121185,27121302-27121392,27121679-27121882,
27121937-27122338
Length = 521
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 140 PDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAM 174
P + W L C ++LIK ++ + K P I++M
Sbjct: 33 PGSELWTDGLICAFELIKGHKKLVQHKSWPTIDSM 67
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 96 VEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVD 131
VE + APEI V C + + +H+ ERW ++++
Sbjct: 681 VEQCLLAPEIRNVVACEGAERVARHERLERWRRLME 716
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 206 CFYALTKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWWKCKKWAV 265
CF+A+ + PL FT M++L S++ V + L E +P ++ K A
Sbjct: 253 CFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLL--GEKAAFIVPTYELKSAAE 310
Query: 266 HTLY 269
LY
Sbjct: 311 LPLY 314
>06_01_1126 -
9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 82 NIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVD-KIHIFLQNP 140
N Q +IR +++ ++ + IR + + + I + D+PE W +++ + +
Sbjct: 169 NFSCQKIVIIRQLLLTSLDDSHGKIRTAIGMAVAAIGQQDWPEDWPELLPYLLKLISDQS 228
Query: 141 DANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLI 185
+ GAL+CL L + + K P L P +Y++I
Sbjct: 229 NGCGVRGALRCLALLSDDLDDTCIPKLVP------ELFPSLYSII 267
>02_05_0169 - 26428330-26429367,26429489-26429640,26429757-26430333
Length = 588
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 122 FPERWTQIVDKIHIFLQNPDANSWMGALQCLYQL 155
F ERW Q +D++H S+ GA++ LY L
Sbjct: 420 FVERWGQALDRVHCADVLKSIKSFAGAVRSLYGL 453
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 172 EAMNLLLPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLDLITRDAFTKWMVV 231
E + LLLP++ +L+ + Q+ +L++ I + A + + R + T +V
Sbjct: 293 EVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVE 352
Query: 232 LRSIMERPVPDTTLQVD 248
L + VPDT + +D
Sbjct: 353 LLQYLILAVPDTFVSLD 369
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 105 IIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIK 157
+I +QL V + I + D+P+ W + + LQ+ D + L++ +K
Sbjct: 37 LIALQLAVLISKIARLDYPKEWPDLFSLLAQQLQSADVLASHRVFMVLFRTLK 89
>02_05_0553 -
29918289-29918361,29918505-29918617,29918694-29918801,
29918991-29919206,29919284-29919559,29919720-29919824,
29919925-29920379,29920746-29920940,29921237-29921639,
29922006-29922518
Length = 818
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 206 CFYALTKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWWKCKKWAV 265
CF+A+ + PL FT M++L S++ V + L E +P ++ K A
Sbjct: 314 CFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNVLL--GERPAFIVPAYELKSAAE 371
Query: 266 HTLY 269
LY
Sbjct: 372 LPLY 375
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 9.3
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 108 VQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKR 167
V L +CL H F ++Q ++ ++ +L+ D N AL CL++L+K Y ++
Sbjct: 272 VTLLLCLGD--SHTFNTHFSQHMEILYKYLK--DKNHRSMALDCLHRLVKFY-LNVYADY 326
Query: 168 TPLIEAMNLLLPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYI------LPLDLIT 221
P + L + L+ L+ + + K + C + + L+L+
Sbjct: 327 QPRNHVWDCLDSVTSQLLTVLKKGLLTQDVQHDKLVEFCVTLAESNLDFAMNHMILELLK 386
Query: 222 RDAFTKWMVV-LRSIMERPVPDTTLQVDED 250
D+ ++ VV LR+++E V + Q+ D
Sbjct: 387 PDSLSEAKVVGLRALLEIVVSPSNKQIGLD 416
>01_04_0046 - 15400890-15403097
Length = 735
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 126 WTQIVDKIHIFL----QNPDANSWMGALQCLYQLIKNYEYHISEK 166
W ++ ++H+F+ Q+P+A + L+ L + +K+ YH S K
Sbjct: 664 WVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKDEGYHSSSK 708
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,696,302
Number of Sequences: 37544
Number of extensions: 302848
Number of successful extensions: 827
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 17
length of query: 274
length of database: 14,793,348
effective HSP length: 81
effective length of query: 193
effective length of database: 11,752,284
effective search space: 2268190812
effective search space used: 2268190812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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