GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
         (274 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 81   7e-16
SB_38692| Best HMM Match : IBN_N (HMM E-Value=8.2e-22)                 37   0.016
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  29   4.1  
SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)              29   5.4  
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  29   5.4  
SB_19252| Best HMM Match : Sigma54_DBD (HMM E-Value=6.5)               28   7.2  
SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    28   7.2  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    28   9.5  
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)                28   9.5  
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 23  EEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNLITSGWQDKEREE--GEPIP 80
           +   SQ+  + GF   LLQ VM N++ +P+RQA  +YLKN++   W+++   +     +P
Sbjct: 98  DSSTSQLKFVPGFVTLLLQSVMSNEIQLPIRQAACIYLKNMVVQYWKERNPSDFPDGDVP 157

Query: 81  FNIHEQDRAMIRDIIVEAIVQAPEIIRV 108
           F I EQD+ +IR+ I+EA++ AP++IRV
Sbjct: 158 FVIAEQDKVVIREHIIEAVISAPDLIRV 185


>SB_38692| Best HMM Match : IBN_N (HMM E-Value=8.2e-22)
          Length = 125

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 6  LIEILR--ATIDPNQRQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQAGVVYLKNL 63
          ++E+LR  ++  P   + AE++L +  +  GF   L+Q+     V++ +R   V+Y+KN 
Sbjct: 12 VLEVLRQGSSQVPGLLRPAEQRLHEWERHCGFYQTLMQIFSNRSVDVNIRWLAVLYIKNG 71

Query: 64 ITSGWQ 69
          I   W+
Sbjct: 72 IDRYWR 77


>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 85  EQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERWTQIVDKIHIFLQNPDANS 144
           E+ +  I+   ++AI     +IR  + + + TI        W Q++  +   L + D N 
Sbjct: 101 EEVKEFIKAECLQAIGDPSPLIRATIGILITTIAAKGDLTNWQQLLPTLCQLLDSEDYNV 160

Query: 145 WMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVNLEPDQSVESILI 199
             G+   L ++ ++    +      L   +N+L+P       +  P   +  IL+
Sbjct: 161 CEGSFGALQKICEDSAEQLDS--DALNRPLNVLIPKFLQFFRHASPKIRLVPILV 213


>SB_55861| Best HMM Match : Transposase_27 (HMM E-Value=0)
          Length = 125

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 115 KTIIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKR-TPLIEA 173
           KT++ H F ER    + ++   L   D   WM     LY+     + H+  KR T  IE 
Sbjct: 26  KTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIER 85

Query: 174 MNLLL 178
            NL L
Sbjct: 86  HNLNL 90


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 83  IHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPERW-----TQIVDKIHIFL 137
           IHE  R +++ +I E  + A    ++ L  CL  ++ +    R      T++V ++   +
Sbjct: 386 IHELHRCLLQALIAETSLPA----KLHLLKCLSVLVLNSPYNRLKTGLLTRVVHQVKPLI 441

Query: 138 QNPDANSWMGALQCLYQLI 156
            N D++  + AL CL  ++
Sbjct: 442 NNKDSSLCIAALTCLGMVV 460


>SB_19252| Best HMM Match : Sigma54_DBD (HMM E-Value=6.5)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 6  LIEILRATIDPNQ--RQQAEEQLSQIHKIIGFAPALLQVVMQNDVNIPVRQ 54
          LIE L A + P+Q  R+QAEE L  +     F   L ++ +  +  + +RQ
Sbjct: 16 LIESLAAILSPDQEVRKQAEEHLKVLEVTEEFGVHLAELAIDTEGALAIRQ 66


>SB_17745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 135 IFLQNPDANSWMGALQCLYQLIKNYE--YHISEKRTPLIEAM-NLLLPMIYNLIVNLEP 190
           + L++ + + W G+++ L  L   YE  + + +  TP +EA+       +Y+L  N  P
Sbjct: 415 VALKDSNVSKWWGSVKSLGGLTDTYEWWHQLIDSDTPTLEALCGKFNEFLYSLTANFAP 473


>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1038

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 28  QIHKIIGFAPALLQVVMQNDVNIPVRQAGV---VYLKNLITSGWQDKEREEGEPIPFNIH 84
           +I  + G  P    + ++ND N+P+    +   +  K+ + SG++D      +PI F   
Sbjct: 565 RILPVDGLNPGYRHIKLRNDCNLPLTLPVLFVHIITKDYVPSGFEDFANALCDPIAFQSQ 624

Query: 85  EQDR 88
           E  R
Sbjct: 625 EDKR 628


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 129 IVDKIHIFLQNPDANSWMGALQCLYQ-LIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVN 187
           I+DK  + ++ PD       L CLY+ +I N   ++ E  T   E++ L      +    
Sbjct: 104 ILDKSDVDVEKPDKKMITMYLSCLYEKIIANPHGNLPEGITSSEESIALPSRDAESANQE 163

Query: 188 LEPDQSVESILIQ-KQILKCFYALTKYILPLDL 219
             PD  +E + ++ K++L+   A  + I PLD+
Sbjct: 164 EAPD-DIEGLPVKTKKVLEASPARMEQISPLDI 195


>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
          Length = 647

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 221 TRDAFTKWMVVLRSIMERPVPDTTLQVDEDERMELPWW 258
           ++ A ++W+  LR+I  R    + L VD++ R ++ WW
Sbjct: 454 SKKARSQWVNALRAISSR---HSKLHVDDELRADIHWW 488


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 211 TKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQ 246
           T Y L +DL TRD   + +  L  +++R VPD TL+
Sbjct: 132 TDYELKVDLPTRDTIKEALGDLEQVLDR-VPDDTLR 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,986,924
Number of Sequences: 59808
Number of extensions: 356209
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 12
length of query: 274
length of database: 16,821,457
effective HSP length: 81
effective length of query: 193
effective length of database: 11,977,009
effective search space: 2311562737
effective search space used: 2311562737
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)