Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
(274 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 62 3e-10
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 32 0.51
U23172-6|AAV58869.1| 484|Caenorhabditis elegans Hypothetical pr... 29 3.6
U23172-5|AAC46527.1| 510|Caenorhabditis elegans Hypothetical pr... 29 3.6
U23172-4|AAL02494.1| 521|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine re... 29 3.6
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 29 4.7
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 6.3
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 6.3
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 6.3
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.3
U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.3
AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans GDP-4-keto-6-... 28 6.3
AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 62.5 bits (145), Expect = 3e-10
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 10 LRATIDPNQ--RQQAEEQLSQIHKIIGFAPALLQVVM--QNDVNIPVRQAGVVYLKNLIT 65
L+ T++P+ R++ EE L + G+ +LQ+V+ Q + +R A V LKN +
Sbjct: 8 LQQTLEPDAAIRKRGEEALRSLQSNPGYIIQILQLVVNEQQQIAPQIRIAAAVALKNFVK 67
Query: 66 SGWQDKEREEGEPIPFNIHEQDRAMIRDIIVEAIVQAPEIIRVQLCVCLKTIIKHDFPER 125
W G + ++D R +++EA+ ++ L L I + DFPE+
Sbjct: 68 RNW-------GPAPEVEMGQEDEEQFRSMLLEAMFNTKSNVQEILSNALYLIAQRDFPEK 120
Query: 126 WTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEY 161
W +V + FL D N + +L + Q+ + + +
Sbjct: 121 WPDLVPYLSKFLNGADLNHLVASLASMEQIFRKFRF 156
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 31.9 bits (69), Expect = 0.51
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 2 DTRKLIEILRA--TIDPNQRQQAEEQLSQIHKIIGFAPALLQVV--MQNDVNIPVRQAGV 57
+ ++I++L+ + D + ++ + QL Q+++ F L+ ++ M+ ++ R
Sbjct: 9 ELEQVIQLLQHAHSTDRDVQRNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDATSRSLAG 68
Query: 58 VYLKNLITSGWQDKEREEGEPIPFNIHEQD-RAMIRDIIVEAIVQAPEIIRVQLCVCLKT 116
+ LKN I + W N + QD + +R +++I +IR + + + T
Sbjct: 69 LLLKNNIRAKW-------------NKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTT 115
Query: 117 IIKHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKN 158
I+ + W ++D + L PD GAL L ++ ++
Sbjct: 116 IVMEENMCDWPDLLDTLATVLMQPDELMQEGALGALQKVFED 157
>U23172-6|AAV58869.1| 484|Caenorhabditis elegans Hypothetical
protein F25B5.6c protein.
Length = 484
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 145 WMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVNLEPDQSVESILIQKQIL 204
W G Q + +N Y + TP ++M IVNL+ + + +L Q
Sbjct: 313 WPGRSQ-IVSTDRNVTYLLDGAHTP--KSMEACSEWAAEEIVNLKKENVKKILLFQCTAD 369
Query: 205 KCFYALTKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERME 254
+C L KY+ PL + L S +++ L DE+ E
Sbjct: 370 RCPSTLIKYLKPLGI---SQIVSCPTQLHSSIDKSADSANLNASRDEQAE 416
>U23172-5|AAC46527.1| 510|Caenorhabditis elegans Hypothetical
protein F25B5.6a protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 145 WMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVNLEPDQSVESILIQKQIL 204
W G Q + +N Y + TP ++M IVNL+ + + +L Q
Sbjct: 339 WPGRSQ-IVSTDRNVTYLLDGAHTP--KSMEACSEWAAEEIVNLKKENVKKILLFQCTAD 395
Query: 205 KCFYALTKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERME 254
+C L KY+ PL + L S +++ L DE+ E
Sbjct: 396 RCPSTLIKYLKPLGI---SQIVSCPTQLHSSIDKSADSANLNASRDEQAE 442
>U23172-4|AAL02494.1| 521|Caenorhabditis elegans Hypothetical
protein F25B5.6b protein.
Length = 521
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 145 WMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLIVNLEPDQSVESILIQKQIL 204
W G Q + +N Y + TP ++M IVNL+ + + +L Q
Sbjct: 350 WPGRSQ-IVSTDRNVTYLLDGAHTP--KSMEACSEWAAEEIVNLKKENVKKILLFQCTAD 406
Query: 205 KCFYALTKYILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVDEDERME 254
+C L KY+ PL + L S +++ L DE+ E
Sbjct: 407 RCPSTLIKYLKPLGI---SQIVSCPTQLHSSIDKSADSANLNASRDEQAE 453
>AF016414-6|AAG24022.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein211 protein.
Length = 323
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 171 IEAMNLLLPMIYNLIVNLEPDQSVESILIQKQILKCFYALTKYILPLD 218
I A+ +P I+ + +P+ SV +L+Q L+CFY ++ LD
Sbjct: 144 IVALTYFIPFIFQVP---DPEISVPVVLMQLPTLRCFYKGPIFVFTLD 188
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 20 QQAEEQLSQIHKIIGFAPALLQVVMQND-----VNIPVRQAGVVYLKNLITSGWQDKERE 74
+Q EE +I K++ P+LL++ ND V IP+ + +YL+ ++ D +E
Sbjct: 1503 EQDEESTLKILKVVPSEPSLLELDFTNDPKVIHVPIPLMEPATMYLEEMVEWIIADAVKE 1562
Query: 75 EGE 77
E
Sbjct: 1563 VSE 1565
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 20 QQAEEQLSQIHKIIGFAPALLQVVMQND-----VNIPVRQAGVVYLKNLITSGWQDKERE 74
+Q EE +I K++ P+LL++ ND V IP+ + +YL+ ++ D +E
Sbjct: 1503 EQDEESTLKILKVVPSEPSLLELDFTNDPKVIHVPIPLMEPATMYLEEMVEWIIADAVKE 1562
Query: 75 EGE 77
E
Sbjct: 1563 VSE 1565
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 161 YHISEKRTPLIEAMNLLLPMI----YNLIVNLEPDQSVESILIQKQI---LKCFYALTKY 213
Y++ +R PL +NL+ P + ++V P S E + + I L F+ L
Sbjct: 249 YYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFFLLLTE 308
Query: 214 ILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVD 248
I+P IT K+++ ++ V T + ++
Sbjct: 309 IIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLN 343
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 161 YHISEKRTPLIEAMNLLLPMI----YNLIVNLEPDQSVESILIQKQI---LKCFYALTKY 213
Y++ +R PL +NL+ P + ++V P S E + + I L F+ L
Sbjct: 249 YYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFFLLLTE 308
Query: 214 ILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVD 248
I+P IT K+++ ++ V T + ++
Sbjct: 309 IIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLN 343
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 161 YHISEKRTPLIEAMNLLLPMI----YNLIVNLEPDQSVESILIQKQI---LKCFYALTKY 213
Y++ +R PL +NL+ P + ++V P S E + + I L F+ L
Sbjct: 249 YYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFFLLLTE 308
Query: 214 ILPLDLITRDAFTKWMVVLRSIMERPVPDTTLQVD 248
I+P IT K+++ ++ V T + ++
Sbjct: 309 IIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLN 343
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 110 LCVCLKTII-KHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNY 159
L CL + KH F W Q ++ L+N D AL+ LY+L+ Y
Sbjct: 349 LITCLLCVSQKHFFLANWVQFLNSCLSHLKNKDPQVARVALESLYRLLWVY 399
>U00035-6|AAA50647.1| 315|Caenorhabditis elegans Hypothetical
protein R01H2.5 protein.
Length = 315
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 KEREEGEPIPFNIHEQDRAMIRDIIVEAIVQA 102
+E E+ EPI +++E D IRD V A+V+A
Sbjct: 226 REYEDVEPIILSVNESDEVSIRD-AVSAVVKA 256
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 110 LCVCLKTII-KHDFPERWTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNY 159
L CL + KH F W Q ++ L+N D AL+ LY+L+ Y
Sbjct: 349 LITCLLCVSQKHFFLANWVQFLNSCLSHLKNKDPQVARVALESLYRLLWVY 399
>AM231686-1|CAJ77755.1| 315|Caenorhabditis elegans
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4- reductase
protein.
Length = 315
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 71 KEREEGEPIPFNIHEQDRAMIRDIIVEAIVQA 102
+E E+ EPI +++E D IRD V A+V+A
Sbjct: 226 REYEDVEPIILSVNESDEVSIRD-AVSAVVKA 256
>AF067222-2|AAC17018.2| 458|Caenorhabditis elegans Hypothetical
protein H11E01.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 126 WTQIVDKIHIFLQNPDANSWMGALQCLYQLIKNYEYHISEKRTPLIEAMNLLLPMIYNLI 185
WT+ K+ IF N A G C+ I H+S +IE + +
Sbjct: 306 WTE-KSKMRIF--NTIALMGSGTFFCVLGYIPKEHAHLSLVALIIIECSTGFICGGFYKC 362
Query: 186 VNLEPDQSVESILIQKQILKCFYALTKYILPLDLITRDAFTKWMVV 231
L Q +L Q Q +KC + +L + T + +W +V
Sbjct: 363 ATLVARQHSHFVLSQIQFIKCLSLFIEPLLVFLICTSNTLEEWRIV 408
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.139 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,813,305
Number of Sequences: 27539
Number of extensions: 283144
Number of successful extensions: 854
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 16
length of query: 274
length of database: 12,573,161
effective HSP length: 80
effective length of query: 194
effective length of database: 10,370,041
effective search space: 2011787954
effective search space used: 2011787954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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