GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002012-TA|BGIBMGA002012-PA|IPR001494|Importin-beta,
N-terminal
         (274 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 151 CLYQLIKNYEYHISEKRTPLIEAMNLLLPMI----YNLIVNLEPDQSVESILI 199
           C  +   +  Y I  +R P+    NL+LP I      L+V   P +S E + +
Sbjct: 195 CCPEPYPDITYEIRLRRRPMFYVFNLILPCILINSVALLVFYVPSESGEKVTL 247


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 151 CLYQLIKNYEYHISEKRTPLIEAMNLLLPMI----YNLIVNLEPDQSVESILIQKQI--- 203
           C  +   +  ++I+ +R  L   +NL++P +      ++V   P  S E + +   I   
Sbjct: 231 CCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSLCSSILLS 290

Query: 204 LKCFYALTKYILP 216
           L  F+ L   I+P
Sbjct: 291 LTVFFLLLAEIIP 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 50  IPVRQAGVVYLKNLITSGWQDKEREEG 76
           IP+R    +  K++  SG++ K R  G
Sbjct: 535 IPLRMTAGIDPKSIFNSGYRPKPRMSG 561


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,348
Number of Sequences: 429
Number of extensions: 3591
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 140,377
effective HSP length: 57
effective length of query: 217
effective length of database: 115,924
effective search space: 25155508
effective search space used: 25155508
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)