GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002011-TA|BGIBMGA002011-PA|undefined
         (435 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   9.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   9.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 79  HNPFEPIIFKANIDCSDPFTEIIPTSSPNVELKKNIDKNMKIKSDMVQNSDIS 131
           H P    I K  I    PFT + P  + + +L +  D +MK+  +  Q  D+S
Sbjct: 263 HKPLNLTIKKMPIAIVAPFTIVEPKLNKHEDLPQ--DLSMKLSKNNDQCLDLS 313


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 79  HNPFEPIIFKANIDCSDPFTEIIPTSSPNVELKKNIDKNMKIKSDMVQNSDIS 131
           H P    I K  I    PFT + P  + + +L +  D +MK+  +  Q  D+S
Sbjct: 155 HKPLNLTIKKMPIAIVAPFTIVEPKLNKHEDLPQ--DLSMKLSKNNDQCLDLS 205


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 172  HGRWFYKNGNVALHHYQAKEKLADQRYVVYGSGESLN 208
            HG+W  + G+VA  +Y  ++++     V Y +  S+N
Sbjct: 1593 HGQWDKQTGHVAPLYYHPEDEV-----VFYNANFSIN 1624


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 170 TGHGRWFYKNGNVALHHYQ 188
           T + RW   NGN + +H++
Sbjct: 371 TSNNRWHNNNGNNSNNHWR 389


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 109 ELKKNIDKNMKIKSDMVQNSDISINIYKMVPA 140
           E++K  DKN  I +  V  +  S++I   VPA
Sbjct: 163 EMRKEFDKNGLILTAAVAAASGSVDISYDVPA 194


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,335
Number of Sequences: 317
Number of extensions: 4247
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 435
length of database: 114,650
effective HSP length: 59
effective length of query: 376
effective length of database: 95,947
effective search space: 36076072
effective search space used: 36076072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)