Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002011-TA|BGIBMGA002011-PA|undefined
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 29 0.96
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 29 1.3
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 29 1.7
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 29 1.7
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 28 2.9
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 2.9
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 2.9
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 28 2.9
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 27 6.8
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 27 6.8
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 6.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 6.8
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 9.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 9.0
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 29.5 bits (63), Expect = 0.96
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 119 KIKSDMVQNSDISINIYKMVPASLEGDWFERHREEKIMHYNSGEVLAEIDETGHGRWFYK 178
K K +V D Y+++ + + ++ +EE+ HY S L+E +E +G ++Y
Sbjct: 37 KEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDLSEFEELDNGSYYYP 96
Query: 179 NGNVALHHYQAKE-KLADQRYVVYGSGESL 207
L Y E L + R VV G SL
Sbjct: 97 CRCGDLGGYVVTEDDLENNRSVVPCMGCSL 126
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 278 KNINSSFPEFVNEDKDATREQSKNPEMLEIELENQVKEKSDKLLKKFRPFQIRMK 332
K ++SSFP + +E+ K P I+ +++ ++D LL++FR +I K
Sbjct: 81 KKLHSSFPSTQQQPPKTEKEKEKEP----IQAKHKKNVENDFLLQRFRKVRIAEK 131
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 61 KDMIQDTKIVPFSFAYEKHNPFEPIIFKANIDCSDPFTEIIPTSSPNVELKKNIDKNMKI 120
KDM+ T + PF++ H+ F F ++ +D FTE + SP E+ N I
Sbjct: 251 KDMVDSTYLPPFNY---DHDVFS---FAPSVASADQFTE--SSMSPTPEVVSPAATNSAI 302
Query: 121 KSDMVQNS 128
S V+ S
Sbjct: 303 SSPFVRKS 310
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 50 LKCGDFEPSKPKDMIQDTKIVPFSFAYEKHNPFEPIIFKANIDCSDPFTEIIPTSSPNVE 109
+K +F + KD+ D+K + SF + P+ F+ N + + + + + + +
Sbjct: 1 MKEQEFSYREAKDVSLDSKGLENSFLSSPNREKTPLFFEGNSNETSGYDQTKNFTHGDGD 60
Query: 110 LKKNIDKNMKIKSDMVQNSDISINIYKMVPASLEGDWFERHREEKIMHYNSGEVLAEIDE 169
+ + + +D++++ D+ ++Y L+ + +H + +S V I+
Sbjct: 61 MSLGNLSELNVATDLLESLDLR-SMYMHGYGHLDSSFSSQHSPDNRKRMSSTSVFKRINS 119
Query: 170 TGHGR 174
GR
Sbjct: 120 EEEGR 124
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 210 KPVRVSILAAFDYLGNGVVYDDFGNTRLKYNQFEGIVCDSKIAPFTRWKWHDLNDPLVLE 269
KP+ S++A G G++ D + + E +VC S+ AP K D D LVL+
Sbjct: 257 KPIFESVIA----FGLGIIKDKELDNSARQAALELLVCFSEGAPAMCRKSSDYTDQLVLQ 312
Query: 270 SVFIDT 275
+ + T
Sbjct: 313 CLLLMT 318
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 2.9
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 220 FDYLGNGVVYDDFGNTRLKYNQF-EGIVCDSKI----APFTRWKWHDLNDPLVLES---V 271
FD + N Y +F N+ + Y + +V D K A F+R + N P + + +
Sbjct: 508 FDIMQNSD-YSEFVNSEIYYRFLAQDVVSDHKSTNSSATFSRLEELGENIPAISKQPSYL 566
Query: 272 FIDTYEKNINSSFPEFVNEDKDATREQSKNPEMLEIELENQVKEKSDKLL 321
I + K+INSS + ++ + KN L++EL++ +++L
Sbjct: 567 SISSSSKSINSSPSPSIQLSVSSSISRDKNLSPLDLELDDPTYSDEEEVL 616
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 278 KNINSSFPEFVNEDKDATREQSKNPEMLEIELENQVKEKSDKLLKK 323
+ + PE ++ E K P++ E++ E++ KEK K +K+
Sbjct: 212 REVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKE 257
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 239 YNQFEGIVCDSKIAPFTRWKWHDLNDPL--VLESVFIDTYEKNINSSFPEF---VNEDKD 293
+ QF DS + +W H+LN L ES ++D I + + V + +D
Sbjct: 55 FQQFISESYDSLVPNLDKWSGHNLNSWLGKKTESSYLDAISNKIRKTGRKLSGSVEDARD 114
Query: 294 ATRE--QSKNPEMLEIELENQVK 314
AT+E +S+ + E ++Q++
Sbjct: 115 ATQEAWESQKASLFESWSDSQLR 137
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 54 DFEPSKPKDMIQDTKIVPFSFAYEKHNPFEP 84
D P K K ++ I P SF ++H+P P
Sbjct: 337 DNSPKKNKVLVNMRPINPSSFVSDRHSPLHP 367
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 6.8
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 315 EKSDKLLKKFRPFQIRMKA----FKINQQFSLRVIDQTNIYLLFRVGTISLKLNLGMF 368
++SD+LL +F P R + K+N R+I +T+ YLL + +S +N F
Sbjct: 164 QESDQLLSRF-PLMKRQSSVSLLLKLNITNRSRIIKETSSYLLSQEDQLSFSVNSNGF 220
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 375 VDTESVDVSQVVTPYDRLPPKSQSVADIQRVLFEVRKCRKADAASRVNTVGRSTQTTRQL 434
+D +D+ + T + RL S+ + + + E C K +R+N + TT +
Sbjct: 319 IDFLRMDILNISTFFRRLNAGCLSLPQLFKFITEEGSCEKEAMKTRLNAIYEEEPTTEEY 378
Query: 435 E 435
E
Sbjct: 379 E 379
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 289 NEDKDATREQSKNPEMLEIELENQVKEKSDKLLKKFRPFQIRMKAFKINQQFSLRVI 345
+E ++AT N L+ +LE Q +E ++LL++ + R + F N S++ I
Sbjct: 502 SEMEEATEILKNNSADLKAQLEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQI 558
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 282 SSFPEFVNEDKDATREQSKNPEMLEIELENQVKEK-SDKLLKKFRPFQI 329
S+ P + ++ R K+ E LEI + +EK S +LK F F+I
Sbjct: 80 STLPLELTQEVQEVRLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEI 128
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 327 FQIRMKAFKINQQFSLRVIDQTNIYLLFR 355
FQ+ + FK+N Q L D +++ +FR
Sbjct: 409 FQVALALFKVNAQGILNATDDSSVMKVFR 437
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,076
Number of Sequences: 5004
Number of extensions: 90806
Number of successful extensions: 319
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 16
length of query: 435
length of database: 2,362,478
effective HSP length: 75
effective length of query: 360
effective length of database: 1,987,178
effective search space: 715384080
effective search space used: 715384080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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