Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002011-TA|BGIBMGA002011-PA|undefined
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0098 - 13459424-13459704,13459954-13460074 30 3.2
10_08_0413 + 17742993-17743500,17744301-17744426,17745196-177453... 30 4.2
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 30 4.2
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 29 5.5
11_04_0268 - 15561250-15561561,15561953-15562103,15562173-155624... 29 7.3
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916... 29 9.6
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 29 9.6
01_07_0177 - 41776168-41776314,41776395-41776456,41777029-417771... 29 9.6
>11_04_0098 - 13459424-13459704,13459954-13460074
Length = 133
Score = 30.3 bits (65), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 376 DTESVDVSQVVTPYDRLPPKSQSVADI-QRVLFEVRKCRKADAASRVNTVGRS 427
D E V + ++ P + LP ++D+ QRVL ++ CR D A R ++ S
Sbjct: 43 DGEEVTIKEL-KPVEPLPWTGAEISDVFQRVLLPLQPCRIRDGAIRASSASTS 94
>10_08_0413 +
17742993-17743500,17744301-17744426,17745196-17745323,
17745462-17745675,17745932-17746163,17746233-17746383,
17746744-17746896,17747132-17747155
Length = 511
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 151 REEKIMHYNSGEVLAEIDETGHGRWFYKNGNVALHHYQAKEKLADQRYVVYGSGESLNGK 210
R K++ G++L + G ++Y++ VA +++ + KL + + G NGK
Sbjct: 202 RSRKLLKPRRGDILGATELQGPTSFYYQDLKVATNNFCEESKLGEGGFGDVFKGLLKNGK 261
Query: 211 PVRVSILAAFD 221
V V L +
Sbjct: 262 TVAVKRLTVME 272
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 332 KAFKINQQFSLRVIDQTNIYLLFRVGTISLKLNLGMFLVSNEIVDTESVDVSQVVTPYDR 391
KA ++Q +L I+ + + R+G ++ +GM + I+ TE +V T +D
Sbjct: 316 KASLVHQWIALGFIEPSKTFSSVRLGEKYIRQLVGMSFLQRSILHTE----QEVFTMHDM 371
Query: 392 LPPKSQSVADIQRVLFEVRK 411
+ ++SV D + V F K
Sbjct: 372 VHDVARSVMDEELVFFNDTK 391
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 29.5 bits (63), Expect = 5.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 288 VNEDKDATREQSKNPEMLEIELENQVKEKSDKLLKKF 324
VN KD ++ L+ EL N KEKSD+L K F
Sbjct: 156 VNHSKDNHDLSTRRLSDLQAELRNLQKEKSDRLQKVF 192
>11_04_0268 -
15561250-15561561,15561953-15562103,15562173-15562404,
15562878-15563091,15563240-15563367,15564347-15564524
Length = 404
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 147 FERHREEKIMHYNSGEVLAEIDETGHGRWFYKNGNVALHHYQAKEKLADQRYVVYGSGES 206
F + +K + G++L + G ++YK+ VA +++ + KL + +
Sbjct: 46 FWTRQSKKPLKPRRGDILGATELQGPTSFYYKDLKVATNNFSEQSKLGEGGFGDVFKASL 105
Query: 207 LNGKPVRVSILAAFD 221
NGK V V L +
Sbjct: 106 KNGKTVAVKRLTVME 120
>10_05_0101 -
9167383-9167679,9167883-9167961,9168161-9168326,
9169201-9169299,9169969-9171361
Length = 677
Score = 28.7 bits (61), Expect = 9.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 75 AYEKHNPFEPIIFKANIDCSDPFTEIIPT---SSPNVELK 111
A+ KH PFE ++F ++ S+P + T SSP+++ K
Sbjct: 281 AHPKHEPFEEVMFVSSFIFSEPIAHLHETERSSSPSMKPK 320
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 102 PTSSPNVELKKNIDKNMKIKSDMVQNSDISINIYKMVPASLEGDWFER----HREEKIMH 157
P N ++ + + KN S NS I ++ K+ + E + + + E+I H
Sbjct: 466 PVEENNDDVNQAVQKNNNFTSSPKGNSKIVLDDDKLPIPNEEFNPVNKSTILNSSEEIKH 525
Query: 158 YNSGEVLAEIDETGH 172
N E++ ++++TGH
Sbjct: 526 INIDEIMTKMNKTGH 540
>01_07_0177 -
41776168-41776314,41776395-41776456,41777029-41777191,
41777278-41777375,41777911-41777992,41778391-41778512,
41778645-41778722,41778873-41779026,41779629-41779767,
41780453-41780820
Length = 470
Score = 28.7 bits (61), Expect = 9.6
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 247 CDSKIAPFTRWKWHDL-NDPLVLESVFIDT--YEKN--INSSFPEFVNE-DKDATREQSK 300
CD+K+ + K + L ND + + D +KN IN+ +P+F N K+A +
Sbjct: 310 CDAKVGYRNKDKLNKLWNDVVANPQDWTDNRPQKKNGSINAKYPDFKNNVSKEALWLDTA 369
Query: 301 NPEMLEIELENQVKEKSDKLLKKFRPF 327
+LE +L++ V KK+RPF
Sbjct: 370 PKAVLE-KLDDLVFSSDFSAAKKYRPF 395
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,086
Number of Sequences: 37544
Number of extensions: 488289
Number of successful extensions: 1191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 9
length of query: 435
length of database: 14,793,348
effective HSP length: 84
effective length of query: 351
effective length of database: 11,639,652
effective search space: 4085517852
effective search space used: 4085517852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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