GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002011-TA|BGIBMGA002011-PA|undefined
         (435 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.71 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.94 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   2.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   2.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 0.71
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 250 KIAPFTRWKWHDLNDPLVLESVF 272
           K+ P+  W+WH + +   L SVF
Sbjct: 227 KLRPYPNWEWHTVGNCDGLTSVF 249


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 118 MKIKSDMVQNSDISINIYKMVPASLEGDWFERHREEKIMHYNSGEV 163
           MK K+D +    +S N Y     S+ GD  +R REE +  + SG +
Sbjct: 460 MKKKADFIAVF-LSENNYPTT--SIHGDRLQRQREEALADFKSGRM 502


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 59  KPKDMIQDTKIVPFSFAYEKHNPFEPIIFKANIDCSD-PFTEIIP 102
           +P   I +T      F Y    PF P+  K N D +  PF +  P
Sbjct: 276 RPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRTP 320


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 59  KPKDMIQDTKIVPFSFAYEKHNPFEPIIFKANIDCSD-PFTEIIP 102
           +P   I +T      F Y    PF P+  K N D +  PF +  P
Sbjct: 276 RPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLPFIDRTP 320


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 168 DETGHGRWFYKNGNVALHHYQAKEKLADQRYV-VYGSGESLNGK 210
           DE G G   Y+N + + H   +     D RY  +  +GES   K
Sbjct: 210 DEKGEGLIMYQNSDDSFHRLTSNTFDYDPRYTKLTVAGESFTVK 253


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 365 LGMFLVSNEIVDTESVDVSQVVTPYDRLPPKSQSVAD-IQRVLFEV 409
           LG F++   I+DT S+ V+ VV       P++  +A  ++RV   V
Sbjct: 303 LGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRRVFIHV 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,063
Number of Sequences: 429
Number of extensions: 5338
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 435
length of database: 140,377
effective HSP length: 60
effective length of query: 375
effective length of database: 114,637
effective search space: 42988875
effective search space used: 42988875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)