Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002011-TA|BGIBMGA002011-PA|undefined
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi... 31 1.5
At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidase (GA... 31 1.5
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 31 1.5
At1g03880.1 68414.m00372 12S seed storage protein (CRB) identica... 30 2.6
At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase fam... 30 3.5
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 30 3.5
At3g57810.2 68416.m06445 OTU-like cysteine protease family prote... 29 4.6
At3g57810.1 68416.m06444 OTU-like cysteine protease family prote... 29 4.6
At3g44790.1 68416.m04823 meprin and TRAF homology domain-contain... 29 4.6
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 4.6
At3g13600.1 68416.m01712 calmodulin-binding family protein conta... 29 4.6
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 29 4.6
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p... 29 8.0
At2g40430.1 68415.m04986 expressed protein identical to Protein ... 29 8.0
>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 706
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 101 IPTSSPNVELKKNIDKNMKIKSDMVQNSDISINIYKMVPASLEGDWFERHREE 153
I +S+ N+E N+ KNMK K + + SI I V A + GD F E+
Sbjct: 623 IYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSED 675
>At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidase
(GA2OX3) identical to ga2ox3 [GI:4678370]
Length = 335
Score = 31.1 bits (67), Expect = 1.5
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 262 LNDPLVLESVFIDTYEKNINSSFPEFVNED-KDATREQSKNPEMLEIELENQVKEKSDKL 320
LN L LES ++ + F E V E K+ R SK EM+E EL+ + KEK +L
Sbjct: 111 LNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRL 170
Query: 321 LK 322
+K
Sbjct: 171 VK 172
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 279 NINSSFPEFVNE-DKDATRE-QSKNPEMLEIELENQVKEKSDKLLKKFRPFQIRMKAFKI 336
N+ S E+ NE D D + E++E+ L + S +L RP+ +R+K F +
Sbjct: 285 NLQISTLEYRNESDHDVCPYVHDRKLEVIEVPLGQDADDVSKRLFHVIRPYAVRLKNFGV 344
Query: 337 NQQFSLRVIDQTNIYL 352
N ++ + + +
Sbjct: 345 NLNRDIQTLSPHEVLM 360
>At1g03880.1 68414.m00372 12S seed storage protein (CRB) identical
to 12S seed storage protein, gi|808937 [SP|P15456]
[Plant Mol Biol 11:805-820 (1988)]; contains Pfam
profile PF00190 Cupin and Prosite 11-S plant seed
storage proteins signature PS00305
Length = 455
Score = 30.3 bits (65), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 149 RHREEKIMHYNSGEVLAEIDETGHGRWFYKNGNVALHHYQAKEKLADQ 196
R +K+ H G+ +A +G +WFY NGN L A + ++Q
Sbjct: 129 RDMHQKVEHLRCGDTIAT--PSGVAQWFYNNGNEPLILVAAADLASNQ 174
>At5g44480.1 68418.m05450 NAD-dependent epimerase/dehydratase
family protein similar to SP|P55180 UDP-glucose
4-epimerase (EC 5.1.3.2) from Bacillus subtilis,
GI:3021357 UDP-galactose 4-epimerase from Cyamopsis
tetragonoloba; contains Pfam profile PF01370 NAD
dependent epimerase/dehydratase family
Length = 436
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 69 IVPFSFAYEKHNPFEPIIFKANIDCSDPFTE 99
I P FAY+ HNP + + F +DC +P T+
Sbjct: 25 ITPTKFAYDHHNPDKVLDF-VEMDCLEPKTK 54
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/43 (30%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 277 EKNINSSFPEFVNEDKDATREQSKNPEMLEIELENQVKEKSDK 319
EK++N+SF + ++ +++ K E+ ++ELE Q++EK ++
Sbjct: 664 EKDVNASFEKELSMEREKIEAVEKMAELAKVELE-QLREKREE 705
>At3g57810.2 68416.m06445 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 317
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 31 PTIKVKEKQEVVDLSSESSLKCGDFE 56
PT+ KEK EV LS E+++KC E
Sbjct: 79 PTVAPKEKLEVSFLSPEANMKCSKIE 104
>At3g57810.1 68416.m06444 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 317
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 31 PTIKVKEKQEVVDLSSESSLKCGDFE 56
PT+ KEK EV LS E+++KC E
Sbjct: 79 PTVAPKEKLEVSFLSPEANMKCSKIE 104
>At3g44790.1 68416.m04823 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 324
Score = 29.5 bits (63), Expect = 4.6
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 323 KFRPFQIRMKAFKINQQFSLRVIDQTNIYLLFRVGTISL-KLNL--GMFLVSNEIVDTES 379
+FR + + +++QQ N+ L ISL KLN G FLV+NE+
Sbjct: 65 RFRLTVVNQLSDELSQQRETETWFDQNVVLSGNRHMISLTKLNAKKGGFLVNNEVKIVVE 124
Query: 380 VDVSQVVTPYDRLPPKSQSVADIQRV 405
VDV QV+ D + ++R+
Sbjct: 125 VDVLQVIGKLDVSEGSQEVTQPLKRI 150
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 29.5 bits (63), Expect = 4.6
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 249 SKIAPFTRWKWHDLN-----DPLVLESVFIDTYEKNINSSFPEFVNEDKDATREQSKNPE 303
S +A F + +DL D L+ + +DT K+I E ++ D T ++ K E
Sbjct: 257 SAMANFLEYDVYDLELTTVKDNSELKKLMLDTKGKSI--VVIEDIDCSLDLTGQRKKKKE 314
Query: 304 MLEIELENQVKEKSDKLLKKFR 325
E E E + K++++KLLK+ R
Sbjct: 315 EDEDEEEEEKKKEAEKLLKRER 336
>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 605
Score = 29.5 bits (63), Expect = 4.6
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 258 KWHDLNDPLVLESVFIDTYEKNINS--SFPEFVNEDKDATREQSKNPEMLEIELENQVKE 315
K DL P +ES T+ I S S V+ED D+ ++ + EM E+E E+ E
Sbjct: 429 KQSDLETPEKMES--FSTFGDEIQSVGSKSTKVSEDYDSGDDEEEEEEMFELEQESMPSE 486
Query: 316 KSDKLLKKFRPFQIR-MKAFKINQQFSLRVIDQTNIYLLFRVG-TISLKLNLG 366
+S ++ + + + KI ++ L+ I+ F++G +S K G
Sbjct: 487 QSSPRGEEKEEGETKESEVVKITEESILKRINSKKETKSFQLGKQLSCKWTTG 539
>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
{Clostridium acetobutylicum}; contains Pfam profiles
PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
DNA gyrase C-terminal domain beta-propeller
Length = 950
Score = 29.5 bits (63), Expect = 4.6
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 112 KNIDKNMKIKSDMVQNSDISINIYKMVPASLEGDWFERHREEKIMHYNSGEVLAEIDETG 171
+ + +N K + M ++ I ++PASL D E+ + ++ ++G L + E G
Sbjct: 774 RTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDASLVKQSTGPWLLFVCENG 833
Query: 172 HGR 174
+G+
Sbjct: 834 YGK 836
>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 462
Score = 28.7 bits (61), Expect = 8.0
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 67 TKIVPFSFAYEKHNPFEPIIFKANIDCSDPFTEIIPTSSPNV-ELKKNIDKNMKIKSDMV 125
T++V + Y K N + K +I C + F + P S N+ ++ K + K++ D
Sbjct: 286 TEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHIWPLEDNA 345
Query: 126 QNSDISINIYKMVPASLEGDWFERHREEKIMHYNSGEVLAEI 167
S +S K +E D EK EVLA +
Sbjct: 346 GES-VSSKSPKNGKQKMESDGDSEEPNEKDKKQKK-EVLAPL 385
>At2g40430.1 68415.m04986 expressed protein identical to Protein
At2g40430 (Swiss-Prot:O22892) [Arabidopsis thaliana];
similar to Glioma tumor suppressor candidate region gene
2 protein (p60) (Swiss-Prot:Q9NZM5) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 8.0
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 11/186 (5%)
Query: 33 IKVKEKQEVVDLSSESSLKCGDFEPSKPKDMIQDTKI--VPFSFAYEKHNPFEPIIFKAN 90
I ++ ++ + ++ +L G+ + +D+ K +P EKH E ++ +
Sbjct: 19 ISSEDIEDFFEKTTRDALSGGNLSAAPSEDLFHVDKSHDLPVKRKIEKHR--ERVLRVDS 76
Query: 91 IDCSDPFTEIIPTSSPNVELKKNIDKNMKIKSDMVQNSDISINIYKMVPASLEGDWFERH 150
I +PF +++P+S P +LKK+ K + I+ + S+ V A L GD +
Sbjct: 77 ILKKNPFVQLVPSSKP--KLKKS-KKTIVIEDKAPKQVQKSVG-DDSVMADLWGDDSKGE 132
Query: 151 REEKIMHYNSGEVLAEIDETGHGRWFYKNGNVALHHYQAKEKLADQRYVVYGSGESLNGK 210
E + E H Y N H E +A + VY + L
Sbjct: 133 HESNPRKIFKNPSIISAVEIEHPGCSY-NPTTESHQDMLAEAVAQEMQKVYKT--ELGPA 189
Query: 211 PVRVSI 216
PV ++I
Sbjct: 190 PVPLTI 195
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,123
Number of Sequences: 28952
Number of extensions: 445014
Number of successful extensions: 1322
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 14
length of query: 435
length of database: 12,070,560
effective HSP length: 83
effective length of query: 352
effective length of database: 9,667,544
effective search space: 3402975488
effective search space used: 3402975488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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