GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002010-TA|BGIBMGA002010-PA|IPR006603|Cystinosin/ERS1p
repeat
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    31   0.17 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    30   0.29 
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    29   0.68 
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.68 
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.89 
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    27   2.1  
SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          25   8.3  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 10  IFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNI 69
           I    + T   L+ +  KV + MS+  K  AEG    + LM      I +LY   N  N 
Sbjct: 133 IMLKMMKTSAKLAIINPKVAEHMSVLSKAKAEG---NSELMMQATTQIQNLYK-VNNVNP 188

Query: 70  MTYMEYPIILFQVYVMFYFVLKYKNMLNLPI 100
           +  +  P+    +++ F++ L  K M  +P+
Sbjct: 189 LNLLSAPVFQGILFISFFYAL--KTMAGVPV 217


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 125 LSYLVVSIYKYTVDILYMPFCT--PLSGFAKVTYIYGIIKSGNADAVSLTTW 174
           LSY+++S   +TV       CT  PLSG + +TYI   + +  A A     W
Sbjct: 78  LSYVIMSFVIWTVMNALGEMCTYLPLSGASPITYIERYVDASLAFAAGWNYW 129


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 283

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 28 VPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKYNIMTYMEYPIILFQVYVMFY 87
          +PQI+     +S EG+    +L  ++    +S+YN   + NI   ++  +     +  F+
Sbjct: 35 IPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAFTTFF 94

Query: 88 FVLKY 92
            L Y
Sbjct: 95 QCLYY 99


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 90  LKYKNMLNLPIIPVMVASYFASVFGFVMDLLPKQVLSYLVVSIYKYTVDILYMPFCTPLS 149
           +KY N+L +PI   +      +VF F   L  K++ +   +S+ K    +    FC   +
Sbjct: 161 IKYANVLGIPIPKDVTVLDTQNVFSFFQSLFLKEISNSNNISLAKMLTHLNIRAFCLHNA 220

Query: 150 G 150
           G
Sbjct: 221 G 221


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 39  SAEGIYIQAMLMEIIGFTIMSLYNYTNK-YNIMTYMEYPIILFQVYVMFYFVLKYKNMLN 97
           S E I I  +LM+    ++ S  +Y NK ++ M Y+ Y + L   Y  F  VL    +L+
Sbjct: 481 SCEEIQIICLLMQNRNISLKSQISYLNKWFDEMVYI-YAVRLHSFYYTFRSVLVTSLLLS 539

Query: 98  L-PIIPV-MVASYFASV 112
           L P   +   AS+ A +
Sbjct: 540 LKPAFSIDFAASWLAKI 556


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 27  KVPQIMSIREKRSAEGIYIQAMLMEIIG---FTIMSLYNYTNKYNIMTYMEYPIIL---- 79
           ++PQI+   + +S EG+ I   ++  +G   +    L    + Y   TY   P IL    
Sbjct: 193 RIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTYANLPWILGAFS 252

Query: 80  --FQVYVMFYFVLKYKN 94
             F    +FY  +KY+N
Sbjct: 253 TIFLDIYIFYQFIKYRN 269


>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 15 LSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNKY 67
          L  + I S  +++   IM + +K + +   +Q    E+I  +I + +N TN++
Sbjct: 22 LYQLEIESKFYIRYQLIMRV-QKETTDAFTLQLASKEVITSSIYNTFNNTNEH 73


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.144    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,059,172
Number of Sequences: 5004
Number of extensions: 42389
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 10
length of query: 260
length of database: 2,362,478
effective HSP length: 71
effective length of query: 189
effective length of database: 2,007,194
effective search space: 379359666
effective search space used: 379359666
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 53 (25.4 bits)