GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002010-TA|BGIBMGA002010-PA|IPR006603|Cystinosin/ERS1p
repeat
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    38   0.008
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281...    31   0.70 
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    31   0.93 
07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511...    30   2.1  
12_02_0544 - 20179129-20179336,20179443-20179594,20179706-201798...    28   6.6  
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007           28   6.6  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 7   LIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNK 66
           L+ + +  L    + +S   K+PQI+ I +  S  G+ + +  +E++G+TI   Y     
Sbjct: 54  LLRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKG 113

Query: 67  YNIMTYMEYPIILFQ 81
                Y E   +L Q
Sbjct: 114 LPFSAYGELAFLLIQ 128


>02_01_0389 -
           2816878-2817390,2817552-2817670,2817803-2817865,
           2818229-2818355,2818607-2818827,2818973-2819136,
           2819766-2819846,2820657-2820728,2820857-2820995,
           2821206-2821690,2821995-2822550,2822610-2822666,
           2822705-2822774
          Length = 888

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 7   LIEIFANALSTMTILSSLFLKVPQIMSIREKRSAEGIYIQAMLMEIIGFTIMSLYNYTNK 66
           L  I    ++T+ ++  LFL + +++  ++KR A G   ++ L+E   F+   L + TN 
Sbjct: 513 LSAIIITIVATVALIVVLFLLLRRMLKAKDKRRAAGPTYESALLENREFSYRELKHITNN 572

Query: 67  YN 68
           ++
Sbjct: 573 FS 574


>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 62  NYTNKYNIMTYMEYPIILFQVYVMFYFVLKYKNMLNLPIIPVMVASYFASV-----FGFV 116
           +Y ++    +Y    + +F +   FY  +K  N  +L    +   SYF  V     + F+
Sbjct: 162 SYISRSVAGSYDNEAVAIFALIFTFYLYVKTLNTGSLFYATLNALSYFYMVCSWGGYTFI 221

Query: 117 MDLLPKQVLSYLVVSIYKYTVDILYMP 143
           ++L+P  VL  +V   Y   + I Y P
Sbjct: 222 INLIPIHVLLCIVTGRYSSRLYIAYAP 248


>07_01_1154 -
           10850206-10850318,10850528-10850658,10850998-10851110,
           10851221-10851307,10852873-10853000,10853132-10853210,
           10853262-10853354,10854211-10854295,10855000-10855085,
           10855183-10855375,10856891-10856970
          Length = 395

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 175 IISVLTNLARVFTVY----VDSGDGKLLANFIISTLLSSGVFFTAL 216
           +I +L N AR+++VY      S  G  +  FI S L+ + V F AL
Sbjct: 33  VIHILGNFARIWSVYSLYNYLSSSGDSMVGFIFSCLVPASVIFLAL 78


>12_02_0544 -
           20179129-20179336,20179443-20179594,20179706-20179864,
           20179989-20180232,20180719-20180835,20181730-20181905
          Length = 351

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 169 VSLTTWIISVLTNLARVFTVYVDSGDGKLLANFIISTLLSSGVFFTALHYQQQTACCPIH 228
           V+LT  + S + +         D    KL  +  +  +L SGV  T + Y  QT C  + 
Sbjct: 192 VTLTQCLFSTVQSFVVAVVAERDFSKWKLRFDISLLAILYSGVMVTGVSYYLQTWCLEMR 251

Query: 229 RP 230
            P
Sbjct: 252 GP 253


>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
          Length = 603

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 154 VTYIYGIIKSGNADAVSLTTWIISVLTNLARVFTVYVDSGDGKLLANFIISTLLSSGV 211
           VTY+   + +GNA+A ++ T  +     L  +     DS  G+ L   I + + +SGV
Sbjct: 62  VTYLTATMHAGNAEAANVVTNFMGTSFMLCLLGGFVADSFLGRYLTIAIFTAVQASGV 119


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.331    0.144    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,880,039
Number of Sequences: 37544
Number of extensions: 209285
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 7
length of query: 260
length of database: 14,793,348
effective HSP length: 81
effective length of query: 179
effective length of database: 11,752,284
effective search space: 2103658836
effective search space used: 2103658836
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 59 (27.9 bits)