GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002009-TA|BGIBMGA002009-PA|undefined
         (200 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.1  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.1  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 62  EKSRSLGSLETVGGVGSRSLSLNSLASDG 90
           E     G   TVGG G   +SL +   DG
Sbjct: 451 ENGSCSGKTITVGGDGYADISLGANEDDG 479


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 62  EKSRSLGSLETVGGVGSRSLSLNSLASDG 90
           E     G   TVGG G   +SL +   DG
Sbjct: 452 ENGSCSGKTITVGGDGYADISLGANEDDG 480


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 62  EKSRSLGSLETVGGVGSRSLSLNSLASDG 90
           E     G   TVGG G   +SL +   DG
Sbjct: 452 ENGSCSGKTITVGGDGYADISLGANEDDG 480


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.122    0.308 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,188
Number of Sequences: 317
Number of extensions: 768
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 200
length of database: 114,650
effective HSP length: 54
effective length of query: 146
effective length of database: 97,532
effective search space: 14239672
effective search space used: 14239672
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)