GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002009-TA|BGIBMGA002009-PA|undefined
         (200 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    28   0.053
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    26   0.28 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   0.49 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.49 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   0.86 

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 0.053
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 110 YEASASEVRRLRSLLTTSEQQLREARATIARLTQVNQNSLSE--IEKREKRAMERKLSEM 167
           ++ ++S   R RS      ++ R+      +L    +  L E    KR  R+ ER+    
Sbjct: 224 FQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSY 283

Query: 168 EEELKYQQALQAENQRLKD----ENGALIRVISKLS 199
           + E +Y++  +   +R +D    E     ++IS LS
Sbjct: 284 KNEREYRKYRETSKERFRDRRERERSKESKIISSLS 319


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSEIEKREK--RAMERKLSEMEEELKYQQALQ 178
           RS      ++ RE      +L    +  L E   R +  R+ ER+ +  + E +YQ+  +
Sbjct: 2   RSCSRDRNREYREKNRRYEKLHNEKEKLLEERTSRNRYSRSREREQNSYKNEREYQKYRE 61

Query: 179 AENQRLKD 186
              +R +D
Sbjct: 62  TSKERSRD 69


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSE--IEKREKRAMERKLSEMEEELKYQQALQ 178
           RS      ++ +E      +L    +  L E    KR  R+ ER+    + E KY++  +
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 179 AENQRLKD----ENGALIRVISKLS 199
              +R +D    E     ++IS LS
Sbjct: 62  RSKERSRDRTERERSREPKIISSLS 86


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 121 RSLLTTSEQQLREARATIARLTQVNQNSLSE--IEKREKRAMERKLSEMEEELKYQQALQ 178
           RS      ++ +E      +L    +  L E    KR  R+ ER+    + E KY++  +
Sbjct: 2   RSCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 179 AENQRLKD----ENGALIRVISKLS 199
              +R +D    E     ++IS LS
Sbjct: 62  RSKERSRDRTERERSREPKIISSLS 86


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 62  EKSRSLGSLETVGGVGSRSLSLNSLASDG 90
           EK R  G + TVG  G+ ++ + +   DG
Sbjct: 454 EKGRCTGKIVTVGSDGNANIEIGAGEEDG 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.122    0.308 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,043
Number of Sequences: 429
Number of extensions: 1383
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 200
length of database: 140,377
effective HSP length: 55
effective length of query: 145
effective length of database: 116,782
effective search space: 16933390
effective search space used: 16933390
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 42 (21.0 bits)