GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002007-TA|BGIBMGA002007-PA|IPR002110|Ankyrin
         (96 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    24   3.5  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    24   4.7  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    23   6.2  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    23   6.2  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   8.2  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 7   SSALFKRAEQLKRWEESETNKQSPTPKRASRIQFSAGIVFLAACTSGDKDEVQRLL 62
           S AL K+  + +    S T K + TP+R+  ++         +    DK+    LL
Sbjct: 571 SPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKNTQSTLL 626


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 3   DNRSSSALFK---RAEQLKRWEESETNKQSPTPKR 34
           DN   + L +   R E LK+  ES+ +K+   PK+
Sbjct: 192 DNEKKAMLMRQQRREENLKKRRESKKSKKGKAPKK 226


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 67  DINTANVDGLTALHQVSQKALKYCSNRI 94
           ++N AN DG T + + +++  +   NRI
Sbjct: 202 ELNNANTDGRTGVDEPARQLHRIAFNRI 229


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 1   MTDNRSSSALFKRA-EQLKRWEESETNKQSPTP 32
           ++  R+ S L   A EQ+K     E  KQ+PTP
Sbjct: 395 LSSPRNDSPLTSAADEQMKHLSLQEEPKQNPTP 427


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 53  GDKDEVQRLLKMGADINTANVDGLTALH 80
           G++     LL+ GAD+   + D +T LH
Sbjct: 145 GNEPITNCLLRWGADVLATDEDKMTPLH 172


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.124    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,220
Number of Sequences: 5004
Number of extensions: 12247
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 5
length of query: 96
length of database: 2,362,478
effective HSP length: 62
effective length of query: 34
effective length of database: 2,052,230
effective search space: 69775820
effective search space used: 69775820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)