Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    24   4.8  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   4.8  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    24   4.8  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    24   6.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    23   8.3  

>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 38  EVKPYIIYEFKKDENTLYAHTGFLGEADVICIRRIDATCDNEYSLWFLEYTIKKDIMQ 95
           +++P+I   F      +YA+ GF G  D   +R +  +  +  +    E+ + + +++
Sbjct: 239 QLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRVLRKSISSTITWSVYEWALHRKVIK 296


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/31 (25%), Positives = 19/31 (61%)

Query: 75  TCDNEYSLWFLEYTIKKDIMQFQCKHLIACL 105
           +CD +  ++  +  + +D+ QF C +L++ L
Sbjct: 142 SCDADIVIFDKKNLVVRDVQQFICSNLVSSL 172


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 44  IYEFKKDENTLYAHTGFLGEADVICIRRID---ATCDN 78
           +Y ++  E  LY H  FL     +C+  +D    T DN
Sbjct: 162 VYVYEPTEENLYVHHDFLLPTFPLCLEWLDYKVGTSDN 199


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
          Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 8  VAMLDSDDEEAATIEQ--PDLAAKKPTFHS 35
          +  ++S  EEAATIE+  P       TFH+
Sbjct: 63 IVQVESQKEEAATIEEKCPKCGNDHMTFHT 92


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 9   AMLDSDDEEAATIEQPDLAAKKPTFHSATEVK 40
           A LD      A  E+PD  A +PT     E++
Sbjct: 581 AALDDQQTTEAPFEEPDEPAHEPTEEEQEEMR 612


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,220
Number of Sequences: 5004
Number of extensions: 20994
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 5
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)