GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   8.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 12 DSDDEEAATIEQPDLAAKKPTFHSA 36
          DSD++E    E+P   ++KP  +SA
Sbjct: 40 DSDNDEE---ERPSFKSRKPKNYSA 61


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 24  PDLAAKKPTFHSATEVKPYIIYEFKKD-ENTLYAHT 58
           PD   K PT   A E    ++ + + D E  L  HT
Sbjct: 845 PDKREKSPTSDKAQEADGEVVVKKEVDEEERLENHT 880


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 21   IEQPDLAAKKPTFHSATEV 39
            IE PD+   +  F S+TE+
Sbjct: 1215 IEDPDVRKGEVEFLSSTEI 1233


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 21   IEQPDLAAKKPTFHSATEV 39
            IE PD+   +  F S+TE+
Sbjct: 1215 IEDPDVRKGEVEFLSSTEI 1233


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 21   IEQPDLAAKKPTFHSATEV 39
            IE PD+   +  F S+TE+
Sbjct: 1215 IEDPDVRKGEVEFLSSTEI 1233


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 21   IEQPDLAAKKPTFHSATEV 39
            IE PD+   +  F S+TE+
Sbjct: 1215 IEDPDVRKGEVEFLSSTEI 1233


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,254
Number of Sequences: 317
Number of extensions: 1033
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 114,650
effective HSP length: 49
effective length of query: 61
effective length of database: 99,117
effective search space:  6046137
effective search space used:  6046137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)