GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0178 + 17594062-17595576                                         27   2.5  
05_03_0459 - 14284513-14286336                                         27   3.3  
12_01_0789 - 7200452-7201240                                           26   5.8  
02_05_0611 + 30344637-30344652,30344743-30344883,30345258-303455...    26   5.8  

>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 15  DEEAATIEQPDLAAKKP---TFHSATEVKPYIIYEFKKDENTLYAHTG 59
           +EEAA I    +A   P    +H   + K Y + + +K  N  Y  +G
Sbjct: 292 EEEAAAILYAPVAGSTPGGMAYHDPDKAKKYDLEDLRKTPNPFYVESG 339


>05_03_0459 - 14284513-14286336
          Length = 607

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 12  DSDDEEAATIEQPDLAAKKPTFHSATEVKPYIIYEFKKDENTLYAHTGFLGEADVICI 69
           D+D +  +   +PD     PT     EVKP + +E  + +  L         A  +CI
Sbjct: 313 DTDADADSASNRPDTTTDHPT---EAEVKPMVEHEVMEQDKKLTTERAAASPASQLCI 367


>12_01_0789 - 7200452-7201240
          Length = 262

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 6   EVVAMLDSDDEEAATIEQPDLAAKKPTFHSATEVK 40
           EVV + DS D+EAA + + +   K  + H   E+K
Sbjct: 157 EVVVVADSMDDEAAEVVEVEQNKKVHSGHEFDEIK 191


>02_05_0611 +
           30344637-30344652,30344743-30344883,30345258-30345572,
           30345907-30346053,30346446-30346543,30346719-30346805,
           30346870-30347080,30347589-30347674
          Length = 366

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 51  ENTLYAHTGFLGEADVICIRRIDATCDNEYSLWFLEYTIKK 91
           EN L  H G +  A+V  I+ +D  C      W LEY  K+
Sbjct: 177 ENKLDRH-GEVDTANVDEIQSVDEDCSRGMKKWVLEYKQKR 216


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,844
Number of Sequences: 37544
Number of extensions: 113636
Number of successful extensions: 211
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)