Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
(110 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0) 27 3.4
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 3.4
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51) 27 3.4
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7) 27 4.5
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31) 27 4.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.9
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 26 7.9
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 26 7.9
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 3 TYSEVVAMLDSDD-EEAATIEQ--PDLAAKKPTFHSATEVKPYIIYEFKKDENTLYAHTG 59
T +E +LD + ++ + I+ PD+ + + T S +KP Y+ N +Y H
Sbjct: 119 TVTEDGGLLDDGELDQLSLIDAALPDIISTRHTLLSNKGIKPETPYKNDNGSNEIYMHNN 178
Query: 60 FLGEADVICI 69
+ AD + I
Sbjct: 179 SVSNADSLQI 188
>SB_48827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 13 SDDEEAATIEQPDLAAKK 30
SD++EAA IEQ DLAA +
Sbjct: 409 SDEDEAADIEQEDLAAAR 426
>SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)
Length = 295
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 33 FHSATEVKPYIIYEFKKDENTLYAH 57
FH E +P+I+ FK+D Y H
Sbjct: 114 FHGLKEKRPFIVSFFKQDGEKKYTH 138
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 21 IEQPDLAAKKPTFHSATEVKPYIIYEFKKDE---NTLYAHTGFLGEADVI 67
I P++ K P+ ++ ++Y+ +K + +TL GFL +A VI
Sbjct: 286 IIHPNMVVKNPSLAKLENLRGGVLYKLEKSQSTPSTLVRFLGFLAQAFVI 335
>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
Length = 976
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 5 SEVVAMLDSDDEEAATIEQPDLAAKKPTFHSATEVKPYIIYEFK 48
+ V + +D E A P ++P S KPY YE +
Sbjct: 738 TRTVIQVKPEDGEPAGFRSPPTPTQEPALPSHKSAKPYTTYELE 781
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 17 EAATIEQPDLAAKKPTFHSATEVKP 41
E AT+E P +A+ +P SA +KP
Sbjct: 1858 EKATVEPPIIASPQPLRRSARNIKP 1882
>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 589
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 14 DDEEAATIEQPDLAAKK----PTFHSATEVKPYIIYEF----KKDENTLYAHTGFLGEAD 65
D+ E A I DLA + P+ S +V+ Y++++ + +N + + F E D
Sbjct: 504 DNNEVARILGFDLAKVEEVVCPSAKSTIDVQNYVVFKQIPVNVQPKNGVKSMLAFPSEID 563
Query: 66 VICIRRIDATCDNEYSLWFLEYTIK 90
V+ + +I A Y + L YT +
Sbjct: 564 VVLVPKIPAIKTIRYKVKLLGYTTR 588
>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
Length = 414
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 75 TCDNEYSLWFLEYTIKKDIMQFQCK 99
T NEY W Y KKD + F C+
Sbjct: 352 TAYNEYFQWRKYYIAKKDALTFPCQ 376
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 37 TEVKPYIIYEFKKDENTLYAHTGFLGEADVICIRRIDATCD 77
T++KPY +Y+F+ + NT A GF V+ + D
Sbjct: 2313 TDLKPYTLYQFRINANT-SAGPGFGNWTSVVTDEAVPGPLD 2352
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 12 DSDDEEAATIEQPDLAAKKPTFHSATEVKPYIIYEFKKDE 51
DSDD+ +T+ A P F+ + + + + KKDE
Sbjct: 722 DSDDDTMSTVSSTASGAGGPDFNYLLNMSMWSLSQEKKDE 761
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 18 AATIEQPDLAAK-KPTFHSATEVKPYIIYEFKKDEN 52
A T QP AA +P HSA +P+IIY +++
Sbjct: 116 ATTQPQPHSAAHTQPRPHSAATTQPHIIYNDNSNDH 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,808,355
Number of Sequences: 59808
Number of extensions: 138559
Number of successful extensions: 261
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 13
length of query: 110
length of database: 16,821,457
effective HSP length: 72
effective length of query: 38
effective length of database: 12,515,281
effective search space: 475580678
effective search space used: 475580678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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