GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   0.82 
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    22   4.4  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 13  SDDEEAATIEQPDLAAKKPTFHSATEVK 40
           ++D EAAT++   +AAK+ +  + T +K
Sbjct: 390 NEDGEAATLQDQLIAAKQKSAEATTAIK 417


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 8   VAMLDSDDEEAATIEQPDLAAKKPTFHSATEVKPYIIYEFKKDENTLYAHTGFLGE 63
           +A L   DE+  T +   +  +   + S TEV+   + E ++  ++L A +G   E
Sbjct: 75  LAGLQMYDEKTNTFKPETVPVQHEAYKSFTEVESSKVNELQQALSSLNAGSGSCAE 130


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,949
Number of Sequences: 2123
Number of extensions: 4368
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 110
length of database: 516,269
effective HSP length: 56
effective length of query: 54
effective length of database: 397,381
effective search space: 21458574
effective search space used: 21458574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)