GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical ...    31   0.18 
Z82062-2|CAB04890.1|  489|Caenorhabditis elegans Hypothetical pr...    29   0.72 
AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical ...    28   1.7  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    27   2.9  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    27   2.9  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    27   2.9  

>AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical
           protein T08E11.8 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 20  TIEQPDLAAKKPTFHSATEVKPYIIYEFKKDENTLYAHTGFLGEADVICIRRIDATCDNE 79
           +I   D+   K  F  +T  + +    +K D + +     FLG    +  RR+D    ++
Sbjct: 445 SITLEDVLYLKEKFLLSTNFRQFKAKLYKTDVDDIIFEENFLG----VPFRRVDGISSDQ 500

Query: 80  YSLWFLEYTIKKDIMQFQ 97
             +WF  YT   + +Q +
Sbjct: 501 PEIWFFPYTYSMEDLQIR 518


>Z82062-2|CAB04890.1|  489|Caenorhabditis elegans Hypothetical
           protein W02A11.3 protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 18  AATIEQPDLAAKKPTFHSATEVK----PYIIYEFKKDENTLYAHTGFLGE 63
           AA + QP     +PT H+   ++    PY +Y F+     ++A  G++GE
Sbjct: 321 AAAVPQPPPPPPQPTLHAPVPIRPQNNPYNLYAFRNSPINVHA-PGYVGE 369


>AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical
           protein F54A3.3 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 14  DDEEAATIEQPDLAAKKPTFHSATEVKPYIIYEFKKDENTLYAHTGFLGEADVICIRRID 73
           +++ +A +EQ + A +K       ++KP +++  +K  + L  H  FL +A + C+RR+ 
Sbjct: 264 EEDISAILEQEEQAIRKQC-DEIIKLKPDLVFT-EKGISDLAQH--FLLKAGITCLRRLK 319

Query: 74  ATCDN 78
            T +N
Sbjct: 320 KTDNN 324


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 2    LTYSEVVAMLDSDDEEAATIEQPDLAAKKPTFHSATE 38
            +T SE   + DS+ + A +IE+ D+ A   +F + T+
Sbjct: 1277 ITQSESAQVFDSETQYALSIEEKDVQATPISFETQTQ 1313


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 2    LTYSEVVAMLDSDDEEAATIEQPDLAAKKPTFHSATE 38
            +T SE   + DS+ + A +IE+ D+ A   +F + T+
Sbjct: 1329 ITQSESAQVFDSETQYALSIEEKDVQATPISFETQTQ 1365


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 2    LTYSEVVAMLDSDDEEAATIEQPDLAAKKPTFHSATE 38
            +T SE   + DS+ + A +IE+ D+ A   +F + T+
Sbjct: 1277 ITQSESAQVFDSETQYALSIEEKDVQATPISFETQTQ 1313


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,522
Number of Sequences: 27539
Number of extensions: 114556
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 9
length of query: 110
length of database: 12,573,161
effective HSP length: 72
effective length of query: 38
effective length of database: 10,590,353
effective search space: 402433414
effective search space used: 402433414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)