GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002006-TA|BGIBMGA002006-PA|undefined
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   0.84 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   0.84 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   1.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 77  DNEYSLWFLEYTIKKDIMQFQCKHLIA 103
           D E  L  L   +++D++ + C+ L+A
Sbjct: 426 DEELILGELSEKLREDVINYNCRSLVA 452


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 77  DNEYSLWFLEYTIKKDIMQFQCKHLIA 103
           D E  L  L   +++D++ + C+ L+A
Sbjct: 394 DEELILGELSEKLREDVINYNCRSLVA 420


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 29   KKPTFHSATEVKPYIIYEFKKDENTL 54
            K+P +     V P +IYE++    TL
Sbjct: 995  KEPPWLEGVHVTPELIYEYQIHPKTL 1020


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 43  IIYEFKKDENTLYAHTGFLGEADVICIRRID 73
           IIY   K EN L    G++   D    +R+D
Sbjct: 487 IIYRDLKPENLLLDSQGYVKLVDFGFAKRLD 517


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 76  CDNEYSLWFLEYTIKKDIMQFQCKHLIACLVPKY 109
           CD  Y   F   T+++  + +    ++ C+   Y
Sbjct: 218 CDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISY 251


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 30   KPTFHSATEVKPYIIYEF 47
            K T+  AT+++ ++ Y+F
Sbjct: 1270 KNTYFEATDLQQHVEYQF 1287


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 30   KPTFHSATEVKPYIIYEF 47
            K T+  AT+++ ++ Y+F
Sbjct: 1266 KNTYFEATDLQQHVEYQF 1283


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,845
Number of Sequences: 429
Number of extensions: 1284
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)