GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002004-TA|BGIBMGA002004-PA|IPR003439|ABC transporter
related, IPR003593|AAA ATPase
         (622 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    36   6e-04
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    36   6e-04
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.51 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.51 

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 36.3 bits (80), Expect = 6e-04
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 36/222 (16%)

Query: 109 GRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERV 168
           G    ++G +G GK++LL  L             FH +  +  S    L+CV  +    V
Sbjct: 104 GELLAILGSSGAGKTTLLNTL------------TFHTSSNLTVS---GLRCVNGIP---V 145

Query: 169 KLEKLAEMLAHCEDDE--------SQEQLMDVYDRLD-DLSADTAEARAANILHGLGFTK 219
             + LA   A+ + D+         +  +     R+D D+S     AR   ++  L  +K
Sbjct: 146 SSKTLASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVISDLALSK 205

Query: 220 EMQQKA-----TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKHY 274
                       K  SGG + R++ A  +   P L+  DEPT+ LD    + + + LK  
Sbjct: 206 CQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEM 265

Query: 275 ----KRILVLISHSQDFLNGVCTNIVHMSKRRLKYYTGNYEA 312
               K ++  I      +  +   ++ MS+ R  +     EA
Sbjct: 266 AMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEA 307



 Score = 27.1 bits (57), Expect = 0.38
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 412 IYKNLEFGIDLDTRL-ALVGPNGAGKSTLLKLL 443
           I KN+ FG+     L A++G +GAGK+TLL  L
Sbjct: 93  ILKNV-FGVAYPGELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 36.3 bits (80), Expect = 6e-04
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 36/222 (16%)

Query: 109 GRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERV 168
           G    ++G +G GK++LL  L             FH +  +  S    L+CV  +    V
Sbjct: 104 GELLAILGSSGAGKTTLLNTL------------TFHTSSNLTVS---GLRCVNGIP---V 145

Query: 169 KLEKLAEMLAHCEDDE--------SQEQLMDVYDRLD-DLSADTAEARAANILHGLGFTK 219
             + LA   A+ + D+         +  +     R+D D+S     AR   ++  L  +K
Sbjct: 146 SSKTLASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVISDLALSK 205

Query: 220 EMQQKA-----TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDACVWLEEELKHY 274
                       K  SGG + R++ A  +   P L+  DEPT+ LD    + + + LK  
Sbjct: 206 CQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEM 265

Query: 275 ----KRILVLISHSQDFLNGVCTNIVHMSKRRLKYYTGNYEA 312
               K ++  I      +  +   ++ MS+ R  +     EA
Sbjct: 266 AMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEA 307



 Score = 27.1 bits (57), Expect = 0.38
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 412 IYKNLEFGIDLDTRL-ALVGPNGAGKSTLLKLL 443
           I KN+ FG+     L A++G +GAGK+TLL  L
Sbjct: 93  ILKNV-FGVAYPGELLAILGSSGAGKTTLLNTL 124


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 269 EELKHYKRILVLISHSQDFLNGVCTNIVHMSKRRLKYYTGNYEAFVRTRMELLENQMKQY 328
           E LK   R+++++    D +  +   +  +     + Y      F   +  LLEN++   
Sbjct: 90  EILKRLNRVVLILKVLVDQVM-ILETMTPLDFMDFRCYLRPASGFQSLQFRLLENKLGVR 148

Query: 329 NWEQDQIAHMKNYIARFGHGSAKLARQAQS-KEKTLAKMVAQGL 371
             +++++ + +NY   FG+    L + A+S KE +L  +V + L
Sbjct: 149 --QENRVKYNQNYSKVFGNDEKALEQIAKSEKEPSLTDLVQRWL 190


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.51
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 269 EELKHYKRILVLISHSQDFLNGVCTNIVHMSKRRLKYYTGNYEAFVRTRMELLENQMKQY 328
           E LK   R+++++    D +  +   +  +     + Y      F   +  LLEN++   
Sbjct: 90  EILKRLNRVVLILKVLVDQVM-ILETMTPLDFMDFRCYLRPASGFQSLQFRLLENKLGVR 148

Query: 329 NWEQDQIAHMKNYIARFGHGSAKLARQAQS-KEKTLAKMVAQGL 371
             +++++ + +NY   FG+    L + A+S KE +L  +V + L
Sbjct: 149 --QENRVKYNQNYSKVFGNDEKALEQIAKSEKEPSLTDLVQRWL 190


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,327
Number of Sequences: 317
Number of extensions: 5297
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 622
length of database: 114,650
effective HSP length: 61
effective length of query: 561
effective length of database: 95,313
effective search space: 53470593
effective search space used: 53470593
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)