GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002004-TA|BGIBMGA002004-PA|IPR003439|ABC transporter
related, IPR003593|AAA ATPase
         (622 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 289 NGVCTNIVHMSKRRLKYY 306
           N  C  +V + KRRL YY
Sbjct: 230 NFTCLEVVFVLKRRLGYY 247


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 157 LQCVMEVDEERVKLEKLAEMLAHCEDDESQEQL 189
           L+    ++  R KL K  +ML    DD  +E+L
Sbjct: 16  LENEFNINRPRRKLSKKQQMLGIWADDSDEEEL 48


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 265 VWLEEELKHYKRILVLISHSQD 286
           VW+E  LKH+  + V+  HS D
Sbjct: 157 VWVEL-LKHFNYMKVIFIHSSD 177


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,641
Number of Sequences: 429
Number of extensions: 7165
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 622
length of database: 140,377
effective HSP length: 62
effective length of query: 560
effective length of database: 113,779
effective search space: 63716240
effective search space used: 63716240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)