Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
         (151 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    28   3.1  
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    27   4.1  
At1g74530.2 68414.m08635 expressed protein                             27   4.1  
At1g74530.1 68414.m08634 expressed protein                             27   4.1  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    27   7.2  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    26   9.5  
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    26   9.5  

>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 11  NPRILADKSTSLTVVPQQASIAASTGPS 38
           +P  LA   T L VVP++  IA  TGP+
Sbjct: 188 DPSTLAPPPTPLPVVPREKPIAKPTGPA 215


>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 7   FGYHNPRILADKSTSLTVVPQQASIAASTGPSQ-PTHRAS 45
           FGY   +I ADKS   TV+P Q     +  PS  P+ R S
Sbjct: 477 FGYQTAQIPADKS-KRTVIPDQPPTVNTYNPSPLPSDRIS 515


>At1g74530.2 68414.m08635 expressed protein 
          Length = 262

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 76  SPAWQLCIT-WTTHDT--HSTFKLSL-DSPQTSSSTGDNHAAFSSVST 119
           +P W+  +  WT   T  +S F++ + +SP TSS + D+  +++  ST
Sbjct: 11  APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


>At1g74530.1 68414.m08634 expressed protein 
          Length = 318

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 76  SPAWQLCIT-WTTHDT--HSTFKLSL-DSPQTSSSTGDNHAAFSSVST 119
           +P W+  +  WT   T  +S F++ + +SP TSS + D+  +++  ST
Sbjct: 11  APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 7    FGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTH 42
            F   NPRIL D S SL   P QA +  S  PS   H
Sbjct: 1646 FPDENPRILVDGSISLQ-KPVQADLIGSKVPSPFLH 1680


>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 70  NAWGYTSPAWQLCITWTTHDTHSTFKLSLDSP 101
           +AW  T+P    C  W  +++    KLS+  P
Sbjct: 478 DAWNDTTPDGDTCNGWNENESEEEVKLSIAFP 509


>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/31 (25%), Positives = 20/31 (64%)

Query: 69  INAWGYTSPAWQLCITWTTHDTHSTFKLSLD 99
           +++ GY+S AW   ++   H T+  F+++++
Sbjct: 94  LSSGGYSSEAWSYVLSLRNHLTNPRFRITIE 124


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.125    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,646
Number of Sequences: 28952
Number of extensions: 117048
Number of successful extensions: 307
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 7
length of query: 151
length of database: 12,070,560
effective HSP length: 75
effective length of query: 76
effective length of database: 9,899,160
effective search space: 752336160
effective search space used: 752336160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)