GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
         (151 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   3.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 104 SSSTGDNHAAFSSVSTH 120
           SSST  N++A+SS S H
Sbjct: 143 SSSTWCNYSAYSSASRH 159


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 10   HNPRILADKSTSLTVVPQQASIA 32
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 24  VVPQQASIAASTGPSQPTHRASWSYGM 50
           V+P   + A+S G   P H +S+  G+
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTGI 365


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 10   HNPRILADKSTSLTVVPQQASIA 32
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429



 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 24  VVPQQASIAASTGPSQPTHRASWSYGM 50
           V+P   + A+S G   P H +S+  G+
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTGI 365


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 24  VVPQQASIAASTGPSQPTHRASWSYGM 50
           V+P   + A+S G   P H +S+  G+
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTGI 132


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.125    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,126
Number of Sequences: 317
Number of extensions: 1192
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 151
length of database: 114,650
effective HSP length: 52
effective length of query: 99
effective length of database: 98,166
effective search space:  9718434
effective search space used:  9718434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)