GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
         (151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    33   0.019
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   1.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   4.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   4.9  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   6.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   8.6  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 52  LHCLITPLQFIAAHDRIINAWGYTSPAWQLCI-TW-TTHDTHSTFKLSLDSPQTSSSTGD 109
           ++C      F A   +I++  G T+   QL + +W T H  H     +L +P+   STG 
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288

Query: 110 NHAAFSS 116
               F+S
Sbjct: 289 GFVLFAS 295


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 10  HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 45
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 5   KNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAA 64
           +N     P  LA  ++S ++V Q      + G  + T R        +H L+ P+     
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGTMGQQKMTSRIRELTERVMHSLMRPVPLDLP 617

Query: 65  HDR 67
           HD+
Sbjct: 618 HDQ 620


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 88  HDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTH 120
           H + S++ +S  SP + +S+G   + F S S H
Sbjct: 124 HSSSSSYAVSPTSPTSPTSSGPIGSNFDSASEH 156


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 53  HCLITPLQFIAAHDRIINAWGYTSPAWQLCI 83
           H  + PL+ I A+D   N WGY      LCI
Sbjct: 300 HVGVVPLKAINAYDFDDNIWGYDD--GDLCI 328


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 83  ITWTTHDTHSTFKLSLDSPQTS-SSTGDNHAAFSSVSTHCKLRAALAT 129
           IT T   T ST   S+  P TS SST  N +   + ST C    ++ T
Sbjct: 191 ITPTVPPT-STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 97  SLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 127
           SL  P+++S+  D H + +S S+H  + + L
Sbjct: 287 SLQLPKSTSNPADLHLSIASASSHKNIFSGL 317


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.125    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,090
Number of Sequences: 5004
Number of extensions: 22759
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 2,362,478
effective HSP length: 67
effective length of query: 84
effective length of database: 2,027,210
effective search space: 170285640
effective search space used: 170285640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)