Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
(151 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1763 - 29316969-29318120 29 2.1
06_03_1377 - 29692895-29692899,29700435-29702190 28 2.8
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 2.8
12_01_0240 + 1801797-1802014,1802314-1802411,1802556-1802638,180... 28 3.7
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 3.7
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561 27 4.9
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686... 27 4.9
05_02_0037 + 5883285-5884292 27 6.4
01_01_0925 - 7306881-7308486,7308797-7308906 27 6.4
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 27 8.5
>07_03_1763 - 29316969-29318120
Length = 383
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 83 ITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 124
+++ H TF +S+ S S G N FS + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 64 AHDRIINAWGYTSPAWQLCITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHC 121
+H+R+ + A ++ T H H +S D S++ H A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 32 AASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSPAWQ 80
A+STG +P +W+ G + L L F AA+ ++ + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>12_01_0240 +
1801797-1802014,1802314-1802411,1802556-1802638,
1802730-1802856,1803168-1803231,1803347-1803444,
1803526-1803610,1803723-1803846,1804153-1804254,
1804869-1804933,1805435-1805516,1805981-1806064
Length = 409
Score = 27.9 bits (59), Expect = 3.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 46 WSYGMQLHCLITPLQFIAAHDRIINAWGYTSP 77
W++GMQ P++F+ ++++ G+ P
Sbjct: 286 WNWGMQAFANFLPVEFLRDRNKVLKLVGFVDP 317
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 15 LADKSTSLTVVPQQASIA-ASTGPSQPTHRASW 46
LAD T P+ SI AST PSQ H A W
Sbjct: 1036 LADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
Length = 495
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 64 AHDRIINAWGYTSPAWQLCITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHC 121
+H+R+ + A ++ T H H +S D S+ H A SS+ST C
Sbjct: 372 SHERLTISHEKLKEAHDNLLSTTQHGAHIDAGISCDLLDDSAICHVAHVALSSISTSC 429
>03_05_0026 +
19966616-19966703,19967992-19968058,19968599-19968677,
19969140-19969231,19969961-19970396,19973749-19974099
Length = 370
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 83 ITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHC 121
++ T H H +S D S+S H A SS+ST C
Sbjct: 282 LSTTQHGAHIDVGISCDLLDDSASCHIPHVASSSISTSC 320
>05_02_0037 + 5883285-5884292
Length = 335
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 92 STFKLSLDSPQTSSSTGDNHAAFSSVSTHCK 122
S+ SL SP +S+S+ HAA S S C+
Sbjct: 42 SSAAASLSSPSSSTSSRSYHAAMSGKSLSCE 72
>01_01_0925 - 7306881-7308486,7308797-7308906
Length = 571
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 18 KSTSLTVVPQQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAW 72
++ +P + I + T P HR + S + LH + L + A+HD + AW
Sbjct: 234 RAKKAATLPAKGGILSFTKRRPPHHRDTVSC-LVLHA-VAGLLYTASHDHTVKAW 286
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 26.6 bits (56), Expect = 8.5
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 38 SQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSPAWQLCITWTTHDTHSTFKLS 97
S+P +AS + +L ++ L +A+ + Y P W C T + + F+ +
Sbjct: 174 SEPKFKASPAMAPRLVIILFLLAVVAS--AAVARSNYEEPLWPDCSTTGNYTVGNQFEKN 231
Query: 98 LD---SPQTSSSTGDNHAAFSSVST 119
LD S +++T D SSV T
Sbjct: 232 LDQLLSTLATAATDDGWFNTSSVGT 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.125 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,002,686
Number of Sequences: 37544
Number of extensions: 150890
Number of successful extensions: 398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 10
length of query: 151
length of database: 14,793,348
effective HSP length: 76
effective length of query: 75
effective length of database: 11,940,004
effective search space: 895500300
effective search space used: 895500300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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