GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
         (151 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_35929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   2.9  
SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 64  AHDRIINAWGYTSPAWQLCI-TWTT-HDTHSTFKLSLDSPQTSSSTGDN 110
           A D +IN W   + AW   I TW T  +T  T   + D+      TG N
Sbjct: 70  AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 83   ITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 127
            +T   H+TH+  +L  DSP  +S  G +  A   + + C+ +AAL
Sbjct: 3656 VTIPCHNTHAWAELPTDSPTITSVHGLDFEAEGELRSLCQEKAAL 3700


>SB_35929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 30 SIAASTGPSQPTHRASWSYGMQLHCLI--TPLQFIAAHDRIINAWGYTSPAWQLCIT 84
          S   + G S P H+ ++SYG    CLI      ++  ++  I+AW +  P+ +  +T
Sbjct: 34 STPRNCGLSFPEHKQTFSYGKAEACLIFGDIRLWLVMYELFIHAWFFKLPSREFYLT 90


>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 4   IKNFGYHNPRILA-DKSTSLTVVPQQASIAASTGPSQPTHR 43
           + NF   +PR +A D S+++ V P   S +     S P HR
Sbjct: 467 VSNFSISSPRTVALDSSSTMNVSPNSDSSSRQPVASDPNHR 507


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 26  PQQASIAASTGPSQPTH 42
           PQ AS+  S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564


>SB_8157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 46 WSYGMQLHCLITPLQFIAAHDRI 68
          WSYG+ L C   P Q + + +R+
Sbjct: 76 WSYGVLLDCKTFPSQHLTSEERV 98


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 79  WQLCITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTH 120
           W +   W+TH+  ST+  +  S   + ST +N + +++ STH
Sbjct: 24  WSIHNNWSTHNNWSTY--NNWSTHNNWSTYNNWSTYNNWSTH 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.125    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,663,911
Number of Sequences: 59808
Number of extensions: 172620
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 13
length of query: 151
length of database: 16,821,457
effective HSP length: 76
effective length of query: 75
effective length of database: 12,276,049
effective search space: 920703675
effective search space used: 920703675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)