GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002003-TA|BGIBMGA002003-PA|undefined
         (151 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    30   0.81 
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    30   0.81 
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    27   4.3  
U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    27   5.7  

>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 27  QQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSPAWQLCITWT 86
           Q   +A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 87  THDTHST 93
            H+  +T
Sbjct: 102 AHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 27  QQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSPAWQLCITWT 86
           Q   +A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 87  THDTHST 93
            H+  +T
Sbjct: 102 AHEASTT 108


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 99  DSPQTSSSTGDNHAAFSSVSTH 120
           D  +TSS+T DN+  FS  STH
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 76  SPAWQLCITWTTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 124
           +P+  +  T + +  +   + SL  PQT  + GD +  ++S  T+C+ R
Sbjct: 324 APSLSIQSTDSFNSAYEDAEESLIQPQTKKNEGDAYGKYNSTLTNCQTR 372


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 6   NFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASW 46
           +FG+H P +  D+ T   VV ++A + A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDR-TKTGVVEREAKLIAANGKFHSVPKRRW 227


>U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical
           protein T09D3.8 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 70  NAWGYTSPAWQLCITW-----TTHDTHSTFKLSLDSPQTSSSTGDNHAAFSSVSTHCK 122
           N W  T      C+ W     T+ D  ST  L  DSP  ++  GD+ A  S  +  C+
Sbjct: 85  NEWLQTDSTSDGCVQWNVYCNTSPDCTSTI-LYADSPSGTTEIGDDLATSSEATLTCQ 141


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
          protein D1007.13a protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 26 PQQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSP 77
          P   +  +ST  S P   +S +YG  +     P  F  +     ++WG T P
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 26  PQQASIAASTGPSQPTHRASWSYGMQLHCLITPLQFIAAHDRIINAWGYTSP 77
           P   +  +ST  S P   +S +YG  +     P  F  +     ++WG T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.125    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,192
Number of Sequences: 27539
Number of extensions: 121818
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)