GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002002-TA|BGIBMGA002002-PA|IPR001993|Mitochondrial
substrate carrier, IPR002067|Mitochondrial carrier protein,
IPR002167|Graves disease carrier protein
         (299 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   103   1e-24
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   103   1e-24
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  103 bits (248), Expect = 1e-24
 Identities = 74/277 (26%), Positives = 131/277 (47%), Gaps = 26/277 (9%)

Query: 19  RHLLAGGIAGAVSRTCTAPLDRLKVFLQV---------NTTRENMRKCLAKMLNEGGITG 69
           +  LAGG+A A+S+T  AP++R+K+ LQV             + M  C  ++  E G   
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 70  MWRGNGINVIKIAPESAIKFAAYEQVKRLIKG--ERSNHPLEIHERFIA-GATAGAISQT 126
            WRGN  NVI+  P  A+ FA  ++ K++  G  +++   L      +A G  AGA S  
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 127 VIYPLEVLKTRLA--LRKTG---QYSGIADAARKIYAREGLRCFYKGYIPNILGIVPYAG 181
            +YPL+  +TRLA  + K G   +++G+ +   KI+  +G+   Y+G+  ++ GI+ Y  
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRA 191

Query: 182 IDLAVYETLKKKYISKYQAHNEQPGILLLLACGSISCTLGQVCSYPLALVRTRLQARENA 241
                Y+T +           ++   L+      +  T+  + SYP   VR R+  +   
Sbjct: 192 AYFGFYDTARGML-----PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGR 246

Query: 242 ARGA---EGTMRGVFREIVQREGIRGLYRGITPNFIK 275
           A+     + T+   +  I + EG    ++G   N ++
Sbjct: 247 AKSEILYKSTLH-CWATIYKTEGGNAFFKGAFSNILR 282



 Score = 61.7 bits (143), Expect = 8e-12
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 107 PLEIHERFIAGATAGAISQTVIYPLEVLKTRLALR-------KTGQYSGIADAARKIYAR 159
           P+   + F+AG  A AIS+T + P+E +K  L ++       +  +Y G+ D   +I   
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 160 EGLRCFYKGYIPNILGIVPYAGIDLAVYETLKKKYISKYQAHNEQPGILL-LLACGSISC 218
           +G   +++G + N++   P   ++ A  +  K+ ++     + +     +  LA G  + 
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAG 126

Query: 219 TLGQVCSYPLALVRTRLQARENAARG-AEGTMRG-VFREIVQREGIRGLYRG 268
                  YPL   RTRL A    A G  E T  G    +I + +GI GLYRG
Sbjct: 127 ATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  103 bits (248), Expect = 1e-24
 Identities = 74/277 (26%), Positives = 131/277 (47%), Gaps = 26/277 (9%)

Query: 19  RHLLAGGIAGAVSRTCTAPLDRLKVFLQV---------NTTRENMRKCLAKMLNEGGITG 69
           +  LAGG+A A+S+T  AP++R+K+ LQV             + M  C  ++  E G   
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 70  MWRGNGINVIKIAPESAIKFAAYEQVKRLIKG--ERSNHPLEIHERFIA-GATAGAISQT 126
            WRGN  NVI+  P  A+ FA  ++ K++  G  +++   L      +A G  AGA S  
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 127 VIYPLEVLKTRLA--LRKTG---QYSGIADAARKIYAREGLRCFYKGYIPNILGIVPYAG 181
            +YPL+  +TRLA  + K G   +++G+ +   KI+  +G+   Y+G+  ++ GI+ Y  
Sbjct: 132 FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRA 191

Query: 182 IDLAVYETLKKKYISKYQAHNEQPGILLLLACGSISCTLGQVCSYPLALVRTRLQARENA 241
                Y+T +           ++   L+      +  T+  + SYP   VR R+  +   
Sbjct: 192 AYFGFYDTARGML-----PDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGR 246

Query: 242 ARGA---EGTMRGVFREIVQREGIRGLYRGITPNFIK 275
           A+     + T+   +  I + EG    ++G   N ++
Sbjct: 247 AKSEILYKSTLH-CWATIYKTEGGNAFFKGAFSNILR 282



 Score = 61.7 bits (143), Expect = 8e-12
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 107 PLEIHERFIAGATAGAISQTVIYPLEVLKTRLALR-------KTGQYSGIADAARKIYAR 159
           P+   + F+AG  A AIS+T + P+E +K  L ++       +  +Y G+ D   +I   
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 160 EGLRCFYKGYIPNILGIVPYAGIDLAVYETLKKKYISKYQAHNEQPGILL-LLACGSISC 218
           +G   +++G + N++   P   ++ A  +  K+ ++     + +     +  LA G  + 
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAG 126

Query: 219 TLGQVCSYPLALVRTRLQARENAARG-AEGTMRG-VFREIVQREGIRGLYRG 268
                  YPL   RTRL A    A G  E T  G    +I + +GI GLYRG
Sbjct: 127 ATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 49  TTRENMRKCLAKMLNEGGITGMW 71
           + REN  + L+ + ++G + G W
Sbjct: 179 SARENELRALSSLFSKGCLVGTW 201


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 49  TTRENMRKCLAKMLNEGGITGMW 71
           + REN  + L+ + ++G + G W
Sbjct: 179 SARENELRALSSLFSKGCLVGTW 201


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 49  TTRENMRKCLAKMLNEGGITGMW 71
           + REN  + L+ + ++G + G W
Sbjct: 179 SARENELRALSSLFSKGCLVGTW 201


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 201 HNEQPGILLLLACGSISCTLG--QVCSYP 227
           H  + GI +  ACG + C  G  ++C  P
Sbjct: 44  HKCKYGIAMSSACGIVQCAKGPDELCGGP 72


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,240
Number of Sequences: 429
Number of extensions: 3261
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 299
length of database: 140,377
effective HSP length: 57
effective length of query: 242
effective length of database: 115,924
effective search space: 28053608
effective search space used: 28053608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)