GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002001-TA|BGIBMGA002001-PA|IPR002048|Calcium-binding
EF-hand
         (132 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   2.2  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   5.0  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
          growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 31 DGNGKIDIHDLSVALKELAPHINRSYA 57
          DG GK D++ +  AL +   H+   YA
Sbjct: 33 DGQGKFDVNFIDPAL-QFCTHLIYGYA 58


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 86  KNLRLQFKHLDRNQDGKVDLEELISAFADL 115
           KN RL F   +   DGKV     ++  +D+
Sbjct: 429 KNARLSFGRAEPVFDGKVPSNGSLNQISDI 458


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 86  KNLRLQFKHLDRNQDGKVDLEELISAFADL 115
           KN RL F   +   DGKV     ++  +D+
Sbjct: 254 KNARLSFGRAEPVFDGKVPSNGSLNQISDI 283


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,947
Number of Sequences: 317
Number of extensions: 759
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 132
length of database: 114,650
effective HSP length: 51
effective length of query: 81
effective length of database: 98,483
effective search space:  7977123
effective search space used:  7977123
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)