GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002001-TA|BGIBMGA002001-PA|IPR002048|Calcium-binding
EF-hand
         (132 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    33   0.002
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    22   7.9  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 25  FSKLDHDGNGKIDIHDLSVALK--ELAPHINRSYAEKFLAKSGWK-VAGDVTLSEFIHYV 81
           FS  D +G+G++D  DL  AL+   L P I          K G K +  +  L  F    
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKMGGTQKRGEKKIKFEEFLPIFSQVK 76

Query: 82  REHEKNLRLQF----KHLDRNQDGKVDLEELISAFADLGIAIGRNEAMNLLK 129
           +E E+     F    K  D+N+DG + L EL  +   LG  +   E  N++K
Sbjct: 77  KEKEQGCFEDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMK 128


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1022

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 74   LSEFIHYVREHEKNLRLQFKHLDRNQDGKVDLEELIS 110
            ++E++H V E++ NL+  ++    N D ++  +E  S
Sbjct: 973  VAEYVHEVMENQYNLQCSYR---GNSDRELQNQEAAS 1006


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,450
Number of Sequences: 2123
Number of extensions: 3786
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 132
length of database: 516,269
effective HSP length: 58
effective length of query: 74
effective length of database: 393,135
effective search space: 29091990
effective search space used: 29091990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)