GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002001-TA|BGIBMGA002001-PA|IPR002048|Calcium-binding
EF-hand
         (132 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.16 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.5  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   4.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 90  LQFKHLDRNQDGKVDLEEL 108
           + F H DRN +G ++ EEL
Sbjct: 240 IMFSHYDRNNNGNLEREEL 258



 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)

Query: 29  DHDGNGKIDIHDLSVALKEL 48
           D DG+GK+++++  +A  +L
Sbjct: 284 DTDGDGKLNVNEFYMAFSKL 303



 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 87  NLRLQFKHLDRNQDGKVDLEELISAFADL 115
           NL     + D + DGK+++ E   AF+ L
Sbjct: 275 NLGHMISYDDTDGDGKLNVNEFYMAFSKL 303


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 78  IHYVREHEKNLRLQFKHLD 96
           I  V  HEKN+R Q K ++
Sbjct: 240 IQAVAAHEKNMREQAKKMN 258


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 30 HDGNGKIDIHDLSVALKELAPHINRSYAEKFLAKSGWKVAGD 71
          HDGN         V+ +EL   +     +  L  SG  +AG+
Sbjct: 25 HDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSGVTLAGN 66


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 78  IHYVREHEKNLRLQFKHLD 96
           I  V  HEKN+R Q K ++
Sbjct: 116 IQAVAAHEKNMREQAKKMN 134


>AF388659-1|AAK71995.1|  782|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform A
          protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 33 NGKIDIHDLSVALKELAPHINRSYAEK 59
          NG+ ++H L+    +L   + R   EK
Sbjct: 57 NGRHNVHSLAFGAIQLRQLLKRQLCEK 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,772
Number of Sequences: 429
Number of extensions: 1046
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 132
length of database: 140,377
effective HSP length: 52
effective length of query: 80
effective length of database: 118,069
effective search space:  9445520
effective search space used:  9445520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)