Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002000-TA|BGIBMGA002000-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR001723|Steroid hormone receptor,
IPR000324|Vitamin D receptor, IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
(384 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 289 2e-80
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 236 2e-64
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 107 1e-25
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 81 1e-17
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 75 1e-15
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 24 2.1
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 24 2.1
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 24 2.1
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 23 2.8
DQ414248-1|ABD63010.2| 311|Tribolium castaneum sloppy-paired pr... 23 3.7
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 23 3.7
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 23 3.7
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 23 3.7
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 23 3.7
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 289 bits (709), Expect = 2e-80
Identities = 164/392 (41%), Positives = 232/392 (59%), Gaps = 38/392 (9%)
Query: 3 SMTGRILYDVPCAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYTCKARNPGGCVVDK 62
S + RIL D+PC VC D SSGKHY +FACDGCAGFFKRS+RR+R+Y CKA++ G C++DK
Sbjct: 28 SSSSRIL-DIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDK 86
Query: 63 AHRNQCRACRLAKCLDAGMNKDAVQHERGPRNSTIRR-QMALFLKDPALPTPEMGLTVPP 121
HRNQCRACRL KC + GMNKDAVQHERGPRNST+RR QM+ + + + G
Sbjct: 87 THRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVMMSPPGNV--- 143
Query: 122 PLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPS--VVNISLKAPSPPPITAALLSPK- 178
L+L +PK+ P S+ P P + P+ + N P PP+ + P
Sbjct: 144 -LNLTMPKYE----PNPSIID-PGP-----ALPPTGFLCNNYPPLPQVPPLPLPPIFPPT 192
Query: 179 --DPEAMCEAAARLLFMNVKWAKNVPAFAXXXXXXXXXXXXXXWKDLFIIGSAQFLYPLD 236
+P A+CE+AA+L+FMNV+W +++PAF W DLF++G+AQFL +D
Sbjct: 193 MINPSAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMD 252
Query: 237 LKILSEGNA-------RIDS--RDVEMFETSLAEIVKVHPDSNEYACLRAIVLFKTSFVD 287
+L E R D+ ++V F+ +L +I + D++E+ACLRAIVLFKTSF
Sbjct: 253 FSVLVEACGVLQQEPHRRDAFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSF-- 310
Query: 288 VNILCRGQSQIGSEYKRLQDLPAVAALQDHSQLVLNEYTTRTYPLDPSRLSQILQLL-PV 346
S ++ K + ++ +QD +Q+ LN++ T TYP P R +IL L+
Sbjct: 311 -----EKPSSSSNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSST 365
Query: 347 IKRVSNLIIVELFFRATIGEIPIERIIGDMYR 378
+ +S I +LFF+ I + PI II +MY+
Sbjct: 366 FRTISGRTIEDLFFKKVIRDTPIVAIISNMYK 397
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 236 bits (577), Expect = 2e-64
Identities = 127/286 (44%), Positives = 175/286 (61%), Gaps = 22/286 (7%)
Query: 3 SMTGRILYDVPCAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYTCKARNPGGCVVDK 62
S + RIL D+PC VC D SSGKHY +FACDGCAGFFKRS+RR+R+Y CKA++ G C++DK
Sbjct: 28 SSSSRIL-DIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDK 86
Query: 63 AHRNQCRACRLAKCLDAGMNKDAVQHERGPRNSTIRR-QMALFLKDPALPTPEMGLTVPP 121
HRNQCRACRL KC + GMNKDAVQHERGPRNST+RR QM+ + + + G
Sbjct: 87 THRNQCRACRLKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRVMMSPPGNV--- 143
Query: 122 PLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSP-PPITAALLSPKDP 180
L+L +PK+ P S+ + + + + P P PPI A + +P
Sbjct: 144 -LNLTMPKYE----PNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAPTMI--NP 196
Query: 181 EAMCEAAARLLFMNVKWAKNVPAFAXXXXXXXXXXXXXXWKDLFIIGSAQFLYPLDLKIL 240
A+CE+AA+LLFMNV+W +++PAF W DLF++G+AQFL +D +L
Sbjct: 197 SAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVL 256
Query: 241 SEGNA-------RIDS--RDVEMFETSLAEIVKVHPDSNEYACLRA 277
E R D+ ++V F+ +L +I + D++E+ACLRA
Sbjct: 257 VEACGVLQQEPHRRDAFLKEVADFQETLKKISQFQLDAHEFACLRA 302
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 107 bits (257), Expect = 1e-25
Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 14 CAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYTCKARNPGGCVVDKAHRNQCRACRL 73
C++C D +SGKHYGV++C+GC GFFKR+VR+D Y C R C++DK RN+C+ CR
Sbjct: 86 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC--REEKNCIIDKRQRNRCQYCRY 143
Query: 74 AKCLDAGMNKDAVQHER 90
KCL+ GM ++AVQ ER
Sbjct: 144 QKCLNMGMKREAVQEER 160
Score = 70.1 bits (164), Expect = 2e-14
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 183 MCEAAARLLFMNVKWAKNVPAFAXXXXXXXXXXXXXXWKDLFIIG-SAQFLYPLDLKILS 241
+C+A + LF V+WAK VP F W +L I S + + D +L+
Sbjct: 214 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLA 273
Query: 242 EGNA--RIDSRDV---EMFETSLAEIV----KVHPDSNEYACLRAIVLFKTSFVDVNILC 292
G + + V +++ L+E+V ++ D E CLRAI+L+ DV
Sbjct: 274 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNP---DV---- 326
Query: 293 RGQSQIGSEYKRLQDLPAVAALQDHSQLVLNEYTTRTYPLDPSRLSQILQLLPVIKRVSN 352
RG ++ + V L++ VL EYT T+P +P R +++L LP ++ +
Sbjct: 327 RG----------IKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGL 376
Query: 353 LIIVELFFRATIGEIPIERIIGDMYRTTKDT 383
+ LFF IG++PI+ + +M T D+
Sbjct: 377 KCLEHLFFFKLIGDVPIDTFLMEMLEGTTDS 407
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 81.0 bits (191), Expect = 1e-17
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 14 CAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYTCKARNPGGCVVDKAHRNQCRACRL 73
C VC D +SG HY C+GC GFF+RS+ ++ Y CK N C +D R +C+ CRL
Sbjct: 188 CLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGN--NCEIDMYMRRKCQECRL 245
Query: 74 AKCLDAGMNKDAVQHE 89
KCL GM + V E
Sbjct: 246 KKCLSVGMRPECVVPE 261
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 74.5 bits (175), Expect = 1e-15
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 14 CAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYTCKARNPGGCVVDKAHRNQCRACRL 73
C VC + ++G H+G F C+GC FF R+ + + +N G CV++K +R C+ACRL
Sbjct: 5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNISSIS-ECKNNGECVINKKNRTACKACRL 63
Query: 74 AKCLDAGMNKDAVQHER 90
KCL GM+K ++ R
Sbjct: 64 RKCLLVGMSKSGSRYGR 80
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 23.8 bits (49), Expect = 2.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 105 LKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMIN 154
L+ P P + +PPP H PP+N + +P+ N +N
Sbjct: 721 LQSPLTPHEAFDVKLPPP------PHPHHQPPRNPVGTNPHDINNPLSVN 764
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 23.8 bits (49), Expect = 2.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 105 LKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMIN 154
L+ P P + +PPP H PP+N + +P+ N +N
Sbjct: 613 LQSPLTPHEAFDVKLPPP------PHPHHQPPRNPVGTNPHDINNPLSVN 656
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 23.8 bits (49), Expect = 2.1
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 83 KDAVQHERGPRNSTIRRQMALFLKDPALPT---PEMGLTVPPPLDLAVPKHNFMSPPQNS 139
++A+Q + R + ++ P LPT ++ VP P +P F + +S
Sbjct: 167 EEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSS 226
Query: 140 LFQHPYPFNR 149
+ P P +R
Sbjct: 227 ALESPNPASR 236
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 23.4 bits (48), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 111 PTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYP 146
P+P G P+ P + +PP+ LFQ+ P
Sbjct: 398 PSPYGGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLP 433
Score = 22.2 bits (45), Expect = 6.4
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 117 LTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSPPPI 170
L +P P+ SP +F+ P P H + P+ L PPI
Sbjct: 382 LNIPSEGIKVEPRDKAPSPYGGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPPI 435
>DQ414248-1|ABD63010.2| 311|Tribolium castaneum sloppy-paired
protein.
Length = 311
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 120 PPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMI 153
PPPLD + S + S + PY +N + M+
Sbjct: 61 PPPLDCSKNSPEKESEEKKSKEKPPYSYNALIMM 94
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 23.0 bits (47), Expect = 3.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 3 SMTGRILYDVPCAVCRDHSSGKHYGVFACDGCAGF-FKRSVRRDR 46
S+T + + CAV S + GV CD G KR RR R
Sbjct: 180 SVTNPTIKEDFCAVLWKDKSTDNEGVSDCDSEPGIPLKRKQRRSR 224
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 146 PFNRIHMINPSVVNISLKAPSPPPITA 172
P N IH + PSV+ L SP TA
Sbjct: 232 PGNNIHGMAPSVMYPHLNRSSPTTATA 258
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 146 PFNRIHMINPSVVNISLKAPSPPPITA 172
P N IH + PSV+ L SP TA
Sbjct: 180 PGNNIHGMAPSVMYPHLNRSSPTTATA 206
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 146 PFNRIHMINPSVVNISLKAPSPPPITA 172
P N IH + PSV+ L SP TA
Sbjct: 363 PGNNIHGMAPSVMYPHLNRSSPTTATA 389
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,735
Number of Sequences: 317
Number of extensions: 4042
Number of successful extensions: 32
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 18
length of query: 384
length of database: 114,650
effective HSP length: 58
effective length of query: 326
effective length of database: 96,264
effective search space: 31382064
effective search space used: 31382064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)
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