Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002000-TA|BGIBMGA002000-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR001723|Steroid hormone receptor,
IPR000324|Vitamin D receptor, IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0066 - 536281-537196,537397-537452 36 0.041
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 33 0.38
01_07_0289 + 42540059-42541141 31 1.6
05_07_0242 + 28615573-28616304 31 2.1
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 30 2.7
11_06_0610 - 25449085-25453284 30 3.6
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 30 3.6
06_03_0854 + 25400855-25403741,25406174-25407708 30 3.6
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 3.6
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 30 3.6
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.7
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 29 4.7
11_06_0525 - 24579393-24581195 29 6.3
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 29 6.3
04_03_0350 + 14755619-14755692,14755697-14755883,14755964-147560... 29 6.3
02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352 29 6.3
01_01_0834 + 6522709-6523452 29 6.3
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 29 8.3
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323... 29 8.3
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 8.3
08_02_1084 - 24232968-24234779 29 8.3
06_01_0438 + 3110703-3111945,3112486-3113057 29 8.3
01_06_1682 - 39130696-39131705,39132355-39132583 29 8.3
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 29 8.3
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 36.3 bits (80), Expect = 0.041
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 104 FLKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLK 163
F DPA PTP P PL A P ++ P S P P +
Sbjct: 191 FDSDPAPPTPPTIARPPRPLPPASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRA 250
Query: 164 APSPPPITAALLSPKDP 180
+P+PPPI A + P P
Sbjct: 251 SPTPPPIPTATVRPPPP 267
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 33.1 bits (72), Expect = 0.38
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 116 GLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSPPPITAALL 175
G T+P P +A P M PP S P P +P+ + AP PPP AA
Sbjct: 403 GQTIPMPPIIAAPAITVMPPPAPSQQPQPPP----PPSHPTPITSVAPAPPPPPPAAAAA 458
Query: 176 SPKDP 180
+ P
Sbjct: 459 AASQP 463
>01_07_0289 + 42540059-42541141
Length = 360
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 140 LFQHPYPFNRIHMINPSVVNISLKAPSPPPITAALLSPKDPEAMCEAA 187
L QHP P + P + SL P+P P +AA+ + P + AA
Sbjct: 24 LLQHPPPPSSSSSPGPVFSSSSLSIPAPAPASAAVAATAPPTPLARAA 71
>05_07_0242 + 28615573-28616304
Length = 243
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 88 HERGPRNSTIRRQMALFLKDPALPTPEMGLTVPPPLDL--AVPKHNFMSPP 136
H R ++Q L L P+ PTP + L +PPP P+H ++ PP
Sbjct: 74 HRSFHRKDDGQQQQQLRLLIPSPPTPRVPLLMPPPQPQPHPHPQHPYLHPP 124
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 109 ALPTPEMGLTVPPPLDLAVPKHNF--MSPP-QNSLFQHPYPFNRIHMINPSVVNISLKAP 165
A P P G+ VPPP+ +++ +PP + PYP N H+ N A
Sbjct: 52 AAPAPHHGVVVPPPMTSGGGPYSYPPATPPFHRGPYLPPYP-NDPHLAFAGNPNPPAAAA 110
Query: 166 SPPPITAALL 175
+P P A L+
Sbjct: 111 APNPAGARLM 120
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 113 PEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNIS---LKAPSPPP 169
P++ +T PP + P H +SPP+ +P P PSV S + PPP
Sbjct: 1065 PQVPVTSEPPPAKSSPPHEPISPPETPEKSYP-PSTPEESSPPSVPKASSPPTEKSLPPP 1123
Query: 170 ITAALLSP 177
T +L P
Sbjct: 1124 ATVSLPPP 1131
Score = 29.5 bits (63), Expect = 4.7
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 108 PALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSP 167
P + P + PPP + +P SPP + P P + V+ SP
Sbjct: 1173 PVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSP 1232
Query: 168 PPITAALLSPKDPEAMCEAAARLL 191
PP A ++SP PE AA ++
Sbjct: 1233 PP-PAPVISPPPPEKSPPPAAPVI 1255
Score = 28.7 bits (61), Expect = 8.3
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 109 ALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKA--PS 166
+LP P + ++PPP +++P S P + P P + + P+ V++ A P
Sbjct: 1271 SLPPPPVK-SLPPPAPVSLPPPVVKSLPPPAPVSLPPPAVK-PLPPPAPVSLPPPAVKPL 1328
Query: 167 PPPITAALLSPKDPEAMCEAAARLLFMNVKWAKNVPA 203
PPP+ L P E++ A K +K PA
Sbjct: 1329 PPPVPQVSLPPPKQESLPPPAKEAEAPPAKESKPPPA 1365
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 111 PTPEMGLTVPP---PLDLAVPKHNFMSPPQ-NSLFQHPYPFNRIHMINPSVVNISLKAPS 166
P P+ PP PL P M PPQ L+ H P H P ++ +PS
Sbjct: 22 PPPQYPHHPPPYAAPLPQYAPYARGMPPPQAQQLYSHLPP----HQQPPHFAAHAMPSPS 77
Query: 167 PPPITAALLSP 177
PPP A + P
Sbjct: 78 PPPPHPAYMHP 88
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.9 bits (64), Expect = 3.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 108 PALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSP 167
P LP P + P P V + +SPP ++L P + PS+ +L+A +P
Sbjct: 1017 PPLPVPTPAVHAPAP---PVEPNAVISPPSSALA----PAYAVPAPAPSLA--ALEALAP 1067
Query: 168 PPITAALLSPKDPE 181
PP T A LS E
Sbjct: 1068 PPATPATLSASSRE 1081
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 3.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 108 PALPTPEMGLTVPPPLDLA---VPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKA 164
P LPTP + PPP A +H+ + PP L P P P+ A
Sbjct: 60 PPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPA 119
Query: 165 PSPPP 169
P+PPP
Sbjct: 120 PAPPP 124
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 29.9 bits (64), Expect = 3.6
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 96 TIRRQMALFLKDPALPTPEMGLTVPPPLDLAV-PKHNFMSPPQNSLFQHPYPFNRIHMIN 154
T+ R L DP+ P +GL L + P + PPQ P P N N
Sbjct: 56 TLNRSEELLTPDPSATLPALGLASGDLLYFTLSPLPSPSPPPQPQPQAQPLPRNP----N 111
Query: 155 PSVVNISLKA-PSPPPITAALLSPKDPEAMC 184
P V +I+ A P+ P+ + S P+A+C
Sbjct: 112 PDVPSIAGAADPTKSPVESG-SSSSMPQALC 141
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 4.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 113 PEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSPPP 169
P + PPP +P H+ + PP P NR+ + P I K P+PPP
Sbjct: 613 PNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLP-NRL-VPPPPAPGIGNKFPAPPP 667
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 29.5 bits (63), Expect = 4.7
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 62 KAHRNQCRACR--LAKCLDAGMNKDAVQHERGPRNSTIRRQMALFLKDPALPTPEMGLTV 119
K H + AC A + A M K + +G ST R + + +P LP +V
Sbjct: 455 KLHLMEILACFSVAAFAIAAAMLKCFQRSPKGASVSTRRLEQSPLAPNPRLPVLPSPQSV 514
Query: 120 PPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSPPPITAALLS 176
P+ L VPK + PP N P ++ + + L P P P+++ L+
Sbjct: 515 LQPVQLTVPK---VEPPVNLKIPTLSPLHKPDLFASFREQVPL--PEPIPVSSVNLN 566
>11_06_0525 - 24579393-24581195
Length = 600
Score = 29.1 bits (62), Expect = 6.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 163 KAPSPPPITAALLSPKDPEAMCEAAARLLFMNVKWAKN 200
KAP+PPP A A+ + + +L +N W+KN
Sbjct: 397 KAPAPPPAVAIANLLHCCPALVDLSLKLKMLNYAWSKN 434
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 29.1 bits (62), Expect = 6.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 124 DLAVPKHNFMSPPQNSLFQHPYP 146
DL VPK F+S + SLF++P P
Sbjct: 730 DLKVPKFEFLSHAKPSLFEYPKP 752
>04_03_0350 +
14755619-14755692,14755697-14755883,14755964-14756072,
14756157-14756379,14756716-14756794,14757222-14757273,
14757354-14757416,14757519-14757616,14757970-14758031,
14758066-14758159,14758430-14758509,14758617-14758686,
14758807-14758864,14758973-14759037,14759127-14759221,
14759318-14759402
Length = 497
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 40 RSVRRDRRYTCKARNPGGCVVDKAHRNQCRAC 71
R++R D R KA PGG K H +QC C
Sbjct: 33 RALREDWRERSKAIPPGGVYPAKDHCSQCGLC 64
>02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352
Length = 191
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 113 PEMGLTVPPPLDLAVPKHNFMSP 135
P +G +PPP L +P+ NF SP
Sbjct: 18 PAVGAALPPPSVLLLPQRNFPSP 40
>01_01_0834 + 6522709-6523452
Length = 247
Score = 29.1 bits (62), Expect = 6.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 150 IHMINPSVVNISLKAPSPPPITAALLSPKDP 180
I +I+P+ + + PSPPP+ A+LL P+ P
Sbjct: 49 ILLISPTSLALLPHLPSPPPLHASLLLPELP 79
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 28.7 bits (61), Expect = 8.3
Identities = 25/92 (27%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
Query: 163 KAPSPPPITAALLSPKDPEAMCEAAARLLFMNVKWAKNVPAFAXXXXXXXXXXXXXXWKD 222
K P PPP+ AA K A L VK K A A WKD
Sbjct: 69 KTPPPPPLAAATAMAKLRSASSRRRVGDLTKPVKAGKKAAATAVDDTGKKGDAGVVVWKD 128
Query: 223 LFIIGSAQFLYPLDLKILSEGNARIDSRDVEM 254
+ S L P I + G +DV +
Sbjct: 129 IVAYESTP-LPPEKTTIAAGGGDARKKKDVSV 159
>11_01_0421 +
3236798-3237144,3237356-3237441,3237741-3237895,
3237971-3238035,3238180-3238363,3238785-3239048,
3239141-3239224,3239727-3239984,3240214-3240472,
3240550-3240755,3240896-3240946,3241041-3241337
Length = 751
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 89 ERGPRNSTIRRQMALFLKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFN 148
+ GP S++ + L +PT E + P D+ VP H F P + L H Y
Sbjct: 195 DEGPATSSVILKFELIY----VPTLEDRTEIEDPSDIYVPVHEFRIPYKALLGLHAYFPV 250
Query: 149 RIHMINPSVVNISL 162
+P +V++++
Sbjct: 251 HFDAFHPVLVDLTM 264
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 108 PALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSP 167
PA+ P + T PP + P PP P P + P + P P
Sbjct: 28 PAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLP-----PLTPPPAIVPPALPPP 82
Query: 168 PPITAALLSPKDP 180
PP+ A ++ P P
Sbjct: 83 PPLPAIVVPPALP 95
>08_02_1084 - 24232968-24234779
Length = 603
Score = 28.7 bits (61), Expect = 8.3
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 105 LKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNI-SLK 163
L P+LP P + PP L P PPQ+SL P P + V+I +
Sbjct: 59 LPPPSLPPP-LPQKQPPSQQLPPPPQQQQPPPQHSL-PPPPPLPQAPPPQQQKVHIPGVA 116
Query: 164 APSP--PPITAALLSPKDP 180
AP+P PP L P P
Sbjct: 117 APAPNHPPSQPNLPPPAAP 135
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 8.3
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 110 LPTPEMGLTVPPPLDLAVPKH-----NFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKA 164
LP P +PP DLA+ K +F+ PQ SL + + F I + S + L A
Sbjct: 24 LPIPVTDEELPPTRDLAMSKQPPPLISFLCLPQRSLGEAAHCFVEI-VCADSAGRLLLSA 82
Query: 165 ---PSPPPITAALLSPK 178
P+P T+A L P+
Sbjct: 83 KPRPAPAATTSAALPPR 99
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 8.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 120 PPPLD-LAVPKHNFMSPPQNSLFQHPYPFNRIHMINPSVVNISLKAPSPP 168
PPP + P H + SPPQ+S + P P+ + S P PP
Sbjct: 214 PPPFNKFPPPSHQYPSPPQSS-YHSPPPYQYTPPNSYQAPPTSYNHPPPP 262
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 28.7 bits (61), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 151 HMINPSVVNISLKAPSPPPITAALLSPKDP 180
H+ P+ S+ AP PP A L++P P
Sbjct: 69 HLAAPTQAAASVSAPPPPSTAAVLIAPSPP 98
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,703
Number of Sequences: 37544
Number of extensions: 514218
Number of successful extensions: 2097
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2044
Number of HSP's gapped (non-prelim): 61
length of query: 384
length of database: 14,793,348
effective HSP length: 83
effective length of query: 301
effective length of database: 11,677,196
effective search space: 3514835996
effective search space used: 3514835996
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 61 (28.7 bits)
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