GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002000-TA|BGIBMGA002000-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR001723|Steroid hormone receptor,
IPR000324|Vitamin D receptor, IPR008946|Nuclear receptor,
ligand-binding, IPR000536|Nuclear hormone receptor, ligand-binding
         (384 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    29   0.16 
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    26   2.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 93  RNSTIRRQMALFLKDPALPTPEMGLTVPPPLDLAVPKHNFMSPPQNSLFQHPYPFNRIHM 152
           R   I  Q A F  DPA P P M    PP   +  P  N + PP+      P P     M
Sbjct: 163 RPPPIAHQQAPFAMDPARPNPGM----PPGPQMMRPPGN-VGPPRTGTPTQPQPPRPGGM 217

Query: 153 I-NPSVVNISLKAPSPPPITAAL---LSPKDPEA 182
              P  V + ++   PP     +   + P+ P A
Sbjct: 218 YPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSA 251


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 108 PALPTPEMGLTVPPPLD-LAVPKHNFMSPPQN-----SLFQHPYP--FNRIHMINPSVVN 159
           P L  P +GL + P    L +P H+ + P         L Q P P   + +++ +PS   
Sbjct: 558 PGLSAP-LGLGMRPQGGPLGLPSHHPLHPSLGLSMGLGLPQVPQPPAGSSLNLSHPSAGM 616

Query: 160 ISLKAPSPPPITAALLSPKDPEAMCEAAA 188
           +    P PPP  +AL  P  P ++  AAA
Sbjct: 617 V----PQPPPPGSALGHPSIPTSLAAAAA 641


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,729
Number of Sequences: 2123
Number of extensions: 16670
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 384
length of database: 516,269
effective HSP length: 65
effective length of query: 319
effective length of database: 378,274
effective search space: 120669406
effective search space used: 120669406
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 49 (23.8 bits)