Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001999-TA|BGIBMGA001999-PA|IPR003578|Ras small GTPase,
Rho type, IPR003577|Ras small GTPase, Ras type, IPR003579|Ras small
GTPase, Rab type, IPR013753|Ras
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 73 3e-14
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 62 5e-11
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 52 4e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 52 5e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 45 8e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 41 1e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 36 0.003
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.060
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.079
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 30 0.24
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 2.2
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 3.0
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 25 6.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 6.8
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 72.9 bits (171), Expect = 3e-14
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKYKHEALLDGEPILFEILDTCPKSLNEIPGNEIAQWAD 65
+ LT++ + ++ EYD + Y+ + +DGE L ++LDT + + + +
Sbjct: 22 SALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGE 81
Query: 66 GLFLVYSITDRESFNYVRRAKQSL-----QPEIPLTLVGNKADMVHLRQVSPEEGEILAK 120
G LVY+IT R SF+ + Q + + P+ LV NK D+ R VS EGE LAK
Sbjct: 82 GFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAK 141
Query: 121 DFECSF 126
C +
Sbjct: 142 SMHCLY 147
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 62.1 bits (144), Expect = 5e-11
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKYKHEALLDGEPILFEILDTCPKSLNEIPGNEIAQWAD 65
++LTV+++ ++ Y ++ + G+ EI+DT + I ++ +
Sbjct: 20 SSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSILNSKHSIGIH 79
Query: 66 GLFLVYSITDRESFNYVRRAKQSLQPE-----IPLTLVGNKADMVHLRQVSPEEGEILAK 120
G LVYSIT + SF V+ + + +P+ +VGNK+D+ R V+ EEG+ LA
Sbjct: 80 GYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKALAN 139
Query: 121 DFECSF 126
+++C++
Sbjct: 140 EWKCAW 145
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 52.4 bits (120), Expect = 4e-08
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 34 LLDGEPILFEILDTCPKSLNEIPGNEIAQWADGLFLVYSITDRESFNYVRRAKQSLQPE- 92
+LD + I +I DT + + + A G +VY IT + SF+ V R + L+
Sbjct: 53 VLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHA 112
Query: 93 ---IPLTLVGNKADMVHLRQVSPEEGEILAKDFECSF 126
I + LVGNK D++HLR VS EE + A + SF
Sbjct: 113 DSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSF 149
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 52.0 bits (119), Expect = 5e-08
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 35 LDGEPILFEILDTCPKSLNEIPGNEIAQWADGLFLVYSITDRESFNYVR----RAKQSLQ 90
LDG+ I +I DT + + A G+ L+Y +TD++SF+ VR +Q
Sbjct: 53 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS 112
Query: 91 PEIPLTLVGNKADMVHLRQVSPEEGEILAKDFECSFXXXXXXXXXXXXXXXFHELCREV 149
+ L+GNK D RQVS E+G+ LA + F F L RE+
Sbjct: 113 ENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKF-LEASAKTNVNVDEAFFTLAREI 170
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 44.8 bits (101), Expect = 8e-06
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 8 LTVRFLTKRYIGEYDHQQDSKYKHEAL-LDGEPILFEILDTCPKSLNEIPGNEIAQWADG 66
L +RF Y Y +K L+G+ + +I DT + + + A G
Sbjct: 24 LLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHG 83
Query: 67 LFLVYSITDRESFNYVRRAKQSLQ----PEIPLTLVGNKADMVHLRQV 110
+ +VY +TD++SFN V++ Q + + LVGNK+DMV + V
Sbjct: 84 IIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVV 131
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKYKHEAL-LDGEPILFEILDTCPKSLNEIPGNEIAQWA 64
T+L RF+ ++ Y + + + L+ + ++ DT + + +
Sbjct: 25 TSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 84
Query: 65 DGLFLVYSITDRESF----NYVRRAKQSLQPEIPLTLVGNKADMVHLRQVSPEEGEILAK 120
+VY IT+ SF ++ + ++ + LVGNK D+ RQV+ EEGE AK
Sbjct: 85 SVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAK 144
Query: 121 DFE 123
+ +
Sbjct: 145 ELK 147
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 36.3 bits (80), Expect = 0.003
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 40 ILFEILDTCPKSLNEIPGNEIAQWADGLFLVYSITDRESFNYVRRAKQSLQPEIPLT--- 96
I +I DT + + A G LVY +T+++SF + ++ P T
Sbjct: 62 IKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICV 121
Query: 97 -LVGNKADMVHLRQVSPEE 114
L G+K+D+ + RQVS EE
Sbjct: 122 VLAGSKSDLQNQRQVSTEE 140
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.060
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKY-KHEALLDGEPILFEILDTCPKSLNEIPGNEIAQWA 64
T++ +++ +++ +Y + + E L+D + + ++ DT + + G + A
Sbjct: 22 TSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGA 81
Query: 65 DGLFLVYSITDRESF--------NYVRRAKQSLQPEIPLTLVGNKADM 104
D LVY + + +SF ++ +A S P L+GNK D+
Sbjct: 82 DCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDV 129
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 31.5 bits (68), Expect = 0.079
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKY-KHEALLDGEPILFEILDTCPKSLNEIPGNEIAQWA 64
T L +F+ +++ EY + + + ++D + + ++ DT + + G + A
Sbjct: 22 TCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGA 81
Query: 65 DGLFLVYSITDRESFNYVRRAKQSL-----QPE--IPLTLVGNKAD 103
D +VY++ + +SF+ V +Q Q E P +VGN+ D
Sbjct: 82 DCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 29.9 bits (64), Expect = 0.24
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 35 LDGEPILFEILDTCPKSLNEIPGNEIAQ---WADGLFLVYSITDRESFNYVRRAKQSLQP 91
+ G+ F+ +DT P ++ + +E+A +DG+ LV + + N R K ++
Sbjct: 204 MKGKTFAFQCIDT-PGHVDFV--DEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILH 260
Query: 92 EIPLTLVGNKADMVHL 107
++P+ LV NK D + L
Sbjct: 261 DMPIVLVLNKVDRLIL 276
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 37 GEPILFEILDTCPKSLNEIPGNEIAQW 63
G+P + + + TCP SL + NE+ +W
Sbjct: 319 GKPTIEKAIITCPSSLVKNWANELVKW 345
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 18 IGEYDHQQDSKYKHEALLDGE 38
IG YDH QDS K +AL D E
Sbjct: 644 IGGYDHVQDSIKKVDALCDIE 664
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 6 TTLTVRFLTKRYIGEYDHQQDSKYKHEALLDGEPILFEILDTC-PKSLNEIPGNEIAQWA 64
T L + + T ++ +Y Y ++ EP + DT + + + Q
Sbjct: 17 TCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQ-T 75
Query: 65 DGLFLVYSITDRESFNYVRR----AKQSLQPEIPLTLVGNKADM 104
D + +S+T SF V+ P +P +VG + D+
Sbjct: 76 DVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDL 119
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 51 SLNEIPGNEIAQWADGLFLVYSITDRESFNYVRRAKQSLQPEIPLTLVGNKADMVHLRQV 110
S+ E NEIA+ + + SIT+R+ V + + ++ ++ K + +
Sbjct: 542 SVPEAASNEIAEKEPAVTAIESITERKEEAPVISSSEKIESGTSISTSDTKGGLANFEND 601
Query: 111 SPEEGEIL 118
S EE E L
Sbjct: 602 SLEELERL 609
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 44 ILDTCPKSLNEIPGNEIAQWADGLFLVYSITDRESFNYVRRAKQSLQPEIPL 95
++D K E P NE + D S++ E+ N + K+ +PE P+
Sbjct: 132 LVDFTRKWAEEAPENETVEITDEFGRTRSVSIYETGNTLLSQKEEYKPEKPI 183
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,190
Number of Sequences: 5004
Number of extensions: 29446
Number of successful extensions: 76
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 15
length of query: 186
length of database: 2,362,478
effective HSP length: 69
effective length of query: 117
effective length of database: 2,017,202
effective search space: 236012634
effective search space used: 236012634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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