GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001999-TA|BGIBMGA001999-PA|IPR003578|Ras small GTPase,
Rho type, IPR003577|Ras small GTPase, Ras type, IPR003579|Ras small
GTPase, Rab type, IPR013753|Ras
         (186 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   8.1  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   8.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.1  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 153 RRRAKHSLLDRMLGSKSACRVYCRGKSDSALP 184
           RRRA   ++++        R  C G+S  ++P
Sbjct: 60  RRRAFVKIIEQPASKALRFRYECEGRSAGSIP 91


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 159 SLLDRMLGSKSACRVYC 175
           SLLD+M  S  A R+ C
Sbjct: 621 SLLDKMRDSSGAGRITC 637


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock
          cognate 70 protein.
          Length = 196

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 25 QDSKYKHEALLDGEP 39
          QD K KH+A + G P
Sbjct: 71 QDFKKKHKADISGNP 85


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock
          protein 70 protein.
          Length = 196

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 25 QDSKYKHEALLDGEP 39
          QD K KH+A + G P
Sbjct: 71 QDFKKKHKADISGNP 85


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 35  LDGEPILFEILDTCP 49
           ++ EPIL+ I   CP
Sbjct: 149 VENEPILYLIFSYCP 163


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,806
Number of Sequences: 317
Number of extensions: 1660
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 186
length of database: 114,650
effective HSP length: 53
effective length of query: 133
effective length of database: 97,849
effective search space: 13013917
effective search space used: 13013917
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)