GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001999-TA|BGIBMGA001999-PA|IPR003578|Ras small GTPase,
Rho type, IPR003577|Ras small GTPase, Ras type, IPR003579|Ras small
GTPase, Rab type, IPR013753|Ras
         (186 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            44   4e-06
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    31   0.029
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           29   0.087
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   4.3  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.6  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 6   TTLTVRFLTKRYIGEYDHQQDSKYKHEAL-LDGEPILFEILDTCPKSLNEIPGNEIAQWA 64
           ++L +RF+  ++    +    + +  + L +D   + FEI DT  +           + A
Sbjct: 38  SSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYRGA 97

Query: 65  DGLFLVYSITDRESF----NYVRRAKQSLQPEIPLTLVGNKADMVHLRQVSPEEGEILAK 120
               +VY I + +SF     +V+  ++   P I + L GNKAD+ + R V  EE +  A 
Sbjct: 98  QAAIVVYDIQNSDSFARAKTWVKELQRQASPNIVIALAGNKADLANSRVVDYEEAKQYAD 157

Query: 121 D 121
           D
Sbjct: 158 D 158


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 30.7 bits (66), Expect = 0.029
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 6   TTLTVRFLTKRYIGEYDHQQDSKYKHEALLDGEPILFEILDTC-PKSLNEIPGNEIAQWA 64
           T + + + T  + GEY       Y    ++DG  +   + DT   +  + +      Q  
Sbjct: 20  TCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLSYPQ-T 78

Query: 65  DGLFLVYSITDRESF-NYVRRAKQSLQ---PEIPLTLVGNKADM 104
           D   + YS+    SF N   +    ++   P+ P+ LVG K D+
Sbjct: 79  DVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKIDL 122


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 29.1 bits (62), Expect = 0.087
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 17 YIGEYDHQQDSKYKHEALLDGEP---ILFEILDTCPKSLNEIPGNEIAQWADGLFLVYSI 73
          Y  +YD  + S+Y H A    EP   + ++  D C   +  +PGNE+   A  L  V S 
Sbjct: 21 YSLQYDSAESSRYYHPAGAGSEPGSNLRYDAPDDCKYRI--LPGNEV-DLACNLRTVNSE 77

Query: 74 TDRESFNYV 82
           D  +F+ +
Sbjct: 78 FDNTNFSVI 86


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/25 (28%), Positives = 17/25 (68%)

Query: 70  VYSITDRESFNYVRRAKQSLQPEIP 94
           +++I +RE +N++R  K + +  +P
Sbjct: 390 MFNINEREFYNWIRNDKPNFREGLP 414


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 18   IGEYDHQQDSKYKHEALLDGEPILFEILDT-CPKSLNEI 55
            +GE+  Q  ++    A   GEP   E+LD  C   L EI
Sbjct: 2543 VGEFIIQASTRLAELARKQGEPKPMELLDVKCHVRLAEI 2581


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,815
Number of Sequences: 2123
Number of extensions: 6271
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 186
length of database: 516,269
effective HSP length: 60
effective length of query: 126
effective length of database: 388,889
effective search space: 49000014
effective search space used: 49000014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)