GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001999-TA|BGIBMGA001999-PA|IPR003578|Ras small GTPase,
Rho type, IPR003577|Ras small GTPase, Ras type, IPR003579|Ras small
GTPase, Rab type, IPR013753|Ras
         (186 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 19 GEYDHQQDSKYKHEALLDGEPILFEILDTCPKSLNEIPG 57
          GEYDH ++  +  +   D   +     D  P +LN I G
Sbjct: 58 GEYDHTKNYPFDVDQWRDKTFVTILRYDGVPSTLNVISG 96


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 70  VYSITDRESFNYVRRAKQSLQPEIPLTLVGNKADMVHLRQV 110
           V S+        V+ ++ S+  + P+T +G  +D+V   +V
Sbjct: 418 VPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYEV 458


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 19 GEYDHQQDSKYKHEALLDGEPILFEILDTCPKSLNEI 55
          GE+DH ++  +  +   D   +  E  +  P SLN +
Sbjct: 63 GEFDHTKNYPFDVDRWRDKTFVTIERNNGVPSSLNVV 99


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 4   DFTTLTVRFLTKRYIGEY 21
           +FT L V F+ KR +G Y
Sbjct: 230 NFTCLEVVFVLKRRLGYY 247


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase
          protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 63 WADGLFLVYSI 73
          WADGL + Y +
Sbjct: 42 WADGLLVFYEV 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,144
Number of Sequences: 429
Number of extensions: 1767
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 186
length of database: 140,377
effective HSP length: 54
effective length of query: 132
effective length of database: 117,211
effective search space: 15471852
effective search space used: 15471852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)