GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001998-TA|BGIBMGA001998-PA|IPR009637|Lung seven
transmembrane receptor
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.088
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    30   0.47 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   2.5  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      28   2.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   5.8  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 32.7 bits (71), Expect = 0.088
 Identities = 16/70 (22%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 226 RDIFIVVELVCC-VAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVACYIYF 284
           RD+F+++  +CC + I   +V + + L ++ + +  A ++++ +     +  +V CY+ F
Sbjct: 105 RDVFLILAAICCTILIPINIVATNKTLANSDSQNAYAKLSIQNVTGNWTWAHVVICYV-F 163

Query: 285 TRIVVFILKK 294
             +V+F+L +
Sbjct: 164 NVLVLFLLAR 173


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 201 MIVIPLQAEIILAESEEGAV-EHNAWRDIFIVVELVCCVAIVFPVVW 246
           M+V  +   I LA+  EGAV  H  W DIF  + ++   A++ P ++
Sbjct: 214 MVVRSVYRVIELAQGWEGAVITHEVWFDIFDFIPMIFTSALLIPSLY 260


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 325 PAAANPYFTPTHFDDVKPEVLSDIGILEGVTRIPNRG 361
           P   + ++  T FD   P++ S  GI+  + ++PN G
Sbjct: 588 PKYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPNDG 624


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 41  LYITSKKEEGLYNLYFNNCPYKGE-GNPTPVNAIIEIFESNEGNYLSAGEIPL 92
           +Y   +KEE   N+ +N+C Y  E GN   V   + +F++   ++    + P+
Sbjct: 85  IYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHLFDTERKHFKKGSDFPI 137


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 220 VEHNAWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVA 279
           +E N ++++F+    +        V W    L D      K  + LR   L +H++   A
Sbjct: 585 LEENTFQELFLHWSPLVRAYFQRLVCWRFLKLDDMEEFQFKGTVTLRVKNLLKHYFTAQA 644

Query: 280 CY 281
            Y
Sbjct: 645 LY 646


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.143    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,098
Number of Sequences: 5004
Number of extensions: 77533
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 5
length of query: 380
length of database: 2,362,478
effective HSP length: 74
effective length of query: 306
effective length of database: 1,992,182
effective search space: 609607692
effective search space used: 609607692
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)